View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9572_low_8 (Length: 367)

Name: NF9572_low_8
Description: NF9572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9572_low_8
NF9572_low_8
[»] chr1 (4 HSPs)
chr1 (191-314)||(48288669-48288792)
chr1 (17-171)||(48289640-48289794)
chr1 (298-358)||(48288600-48288660)
chr1 (307-344)||(19758343-19758380)
[»] chr8 (1 HSPs)
chr8 (307-348)||(33557847-33557888)
[»] chr3 (1 HSPs)
chr3 (307-340)||(2983176-2983209)
[»] chr6 (1 HSPs)
chr6 (307-353)||(7343313-7343359)
[»] chr7 (1 HSPs)
chr7 (307-339)||(16866407-16866439)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 191 - 314
Target Start/End: Complemental strand, 48288792 - 48288669
Alignment:
Q  191 aaagagatactcacaatcatattgacaataaatgttgcgctcaaaacattatgaaggagtcaattcaatcatttgtattcaattcgttataaaatgtaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48288792 aaagagatactcacaatcatattgacaataaatgttgcgctcaaaacattatgaaggagtcaattcaatcatttgtattcaattcgttataaaatgtaag 48288693  T
Q  291 caaaaataagagaaaataactttt 314  Q
    ||||||||||||||||||||||||    
T  48288692 caaaaataagagaaaataactttt 48288669  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 48289794 - 48289640
Alignment:
Q  17 cataatcaaatttacatcacttaaaagaaaaagatagttgagagaccagtttaaacgtatttgaaaatacatagtcaaattgaaagaattgggttttaaa 116  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48289794 cataatcaaatttgcatcacttaaaaaaaaaaaatagttgagagaccagtttaaacgtatttgaaaatacatagtcaaattgaaagaatttggttttaaa 48289695  T
Q  117 gggattaaaacnnnnnnnnnaaaggagggattaaaactttcaattatgcaactat 171  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||    
T  48289694 gggattaaaactttttttttaaaggagggattaaaactttcaattatgcaactat 48289640  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 48288660 - 48288600
Alignment:
Q  298 aagagaaaataacttttattgatcaatttttacttatattttatgacagatagagtattat 358  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  48288660 aagagaaaataatttttattgatcaatttttacttatattttaagacagatagagtattat 48288600  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Original strand, 19758343 - 19758380
Alignment:
Q  307 taacttttattgatcaatttttacttatattttatgac 344  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  19758343 taacttttgttgaccaatttttacttatattttatgac 19758380  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 33557847 - 33557888
Alignment:
Q  307 taacttttattgatcaatttttacttatattttatgacagat 348  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  33557847 taacttttattgatcaatttttacttatgttttaggacagat 33557888  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 340
Target Start/End: Complemental strand, 2983209 - 2983176
Alignment:
Q  307 taacttttattgatcaatttttacttatatttta 340  Q
    ||||||||||||||||||||||||||||||||||    
T  2983209 taacttttattgatcaatttttacttatatttta 2983176  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 7343313 - 7343359
Alignment:
Q  307 taacttttattgatcaatttttacttatattttatgacagatagagt 353  Q
    |||||||| ||||||||||||||||||||||||| ||| || |||||    
T  7343313 taacttttgttgatcaatttttacttatattttaggacggagagagt 7343359  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 16866439 - 16866407
Alignment:
Q  307 taacttttattgatcaatttttacttatatttt 339  Q
    |||||||||||||||||||||| ||||||||||    
T  16866439 taacttttattgatcaatttttgcttatatttt 16866407  T

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