View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9573_high_15 (Length: 274)
Name: NF9573_high_15
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 36167794 - 36167536
Alignment:
| Q |
1 |
ttcagggcagggccgacccaataacttttaaaagtaaccgaactctaaaccaattttgaatatatggggtttttcttattcgactataagacatttttgc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36167794 |
ttcagggcaaggccgacccaataacttttaaaagtaaccgaactctaaaacaattttgaatatatggggtttttcttattcgactataagacatttttgc |
36167695 |
T |
|
| Q |
101 |
atgtaaaactaatgaaaaatattttatcattttcgttttaggccttacccttgagccaaccctgatttgggggctccaacgtttaagtttgtgagaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
36167694 |
atgtaaaactaatgaaaaatattttatcattttcgttttaggccttgcccttaagccaaccctaatttgggggctccaacgcttaagttagtgagaattt |
36167595 |
T |
|
| Q |
201 |
tatgagatctagagagcatggtgttgattcacatatcatcgtctaattatcattatagg |
259 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36167594 |
tatgagacctagagagcatggtgttaattcacatatcatcgtctaattatcattatagg |
36167536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 38703470 - 38703590
Alignment:
| Q |
13 |
ccgacccaataacttttaaaagtaaccgaactctaaaccaattttgaatatatggggtttttcttattcgactataagacatttttgcatgtaa-aacta |
111 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| | |||| |||||||||||||||| || | || || |||||||||||| | |||||| ||||| | || |
|
|
| T |
38703470 |
ccgacctaataatttttaaaagtaagtgaaatttaaaacaattttgaatatatgaggctatttttgttcgactataaggccattttgcttgtaatattta |
38703569 |
T |
|
| Q |
112 |
atgaaaaatattttatcattt |
132 |
Q |
| |
|
|||||||||| ||||| |||| |
|
|
| T |
38703570 |
atgaaaaataatttattattt |
38703590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 7988883 - 7988984
Alignment:
| Q |
8 |
cagggccgacccaataacttttaaaagtaaccgaactctaaacca-attttgaatatatgggg-tttttcttattcgactataagacatttttgcatgta |
105 |
Q |
| |
|
|||| |||||||||||| |||||||||||| |||| ||||| || |||||||||||||||| ||||| || ||||||||| || | ||||||| |||| |
|
|
| T |
7988883 |
caggaccgacccaataatttttaaaagtaa-cgaagcctaaagcagtttttgaatatatggggtttttttttgttcgactatgaggcctttttgcttgta |
7988981 |
T |
|
| Q |
106 |
aaa |
108 |
Q |
| |
|
||| |
|
|
| T |
7988982 |
aaa |
7988984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 7584680 - 7584592
Alignment:
| Q |
45 |
ctaaaccaattttgaatatatggggtttttcttattcgactataagacatttttgcatgtaaaa-ctaatgaaaaatattttatcattt |
132 |
Q |
| |
|
||||| || ||||||||||||||||| | || ||||||| |||| ||||||||| ||||||| | |||||||||||||||| |||| |
|
|
| T |
7584680 |
ctaaagcagttttgaatatatggggtcatgtttgttcgactctaaggcatttttgcttgtaaaatttgatgaaaaatattttattattt |
7584592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University