View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9573_high_19 (Length: 252)

Name: NF9573_high_19
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9573_high_19
NF9573_high_19
[»] chr2 (3 HSPs)
chr2 (15-132)||(8019528-8019645)
chr2 (146-236)||(8019760-8019850)
chr2 (146-236)||(22391113-22391200)
[»] chr3 (18 HSPs)
chr3 (60-129)||(28183439-28183508)
chr3 (83-132)||(28081438-28081487)
chr3 (60-132)||(28147234-28147307)
chr3 (1-132)||(17746683-17746823)
chr3 (1-132)||(19048003-19048143)
chr3 (67-132)||(27974226-27974291)
chr3 (145-236)||(27918358-27918446)
chr3 (181-236)||(28081765-28081817)
chr3 (69-116)||(28482365-28482412)
chr3 (69-116)||(28511177-28511224)
chr3 (181-237)||(26210261-26210314)
chr3 (181-237)||(26237505-26237558)
chr3 (83-129)||(27918067-27918113)
chr3 (181-236)||(26180771-26180823)
chr3 (91-132)||(28053208-28053249)
chr3 (91-132)||(28063633-28063674)
chr3 (88-132)||(18026977-18027021)
chr3 (88-132)||(27392719-27392763)
[»] chr7 (1 HSPs)
chr7 (146-237)||(8693518-8693606)
[»] scaffold0257 (1 HSPs)
scaffold0257 (60-112)||(17021-17073)
[»] scaffold0043 (1 HSPs)
scaffold0043 (151-236)||(54907-54989)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 8019528 - 8019645
Alignment:
Q  15 tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattcttatcatatgcatgtgtttatttcccattcatttattgcagga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8019528 tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattcttatcatatgcatgtgtttatttcccatttatttattgcagga 8019627  T
Q  115 attgagggggaatgtgga 132  Q
    ||||||| ||||||||||    
T  8019628 attgaggaggaatgtgga 8019645  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 8019760 - 8019850
Alignment:
Q  146 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 236  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019760 taagatgtctacctcacttacttaagatgagaatcaaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 8019850  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 22391113 - 22391200
Alignment:
Q  146 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 236  Q
    |||| |||||||| || || ||| | |||||||| |||||||||||||| || ||| ||||||||||   ||||||||||||| |||||||    
T  22391113 taaggtgtctaccacagttgcttgatatgagaattgaagaatgcaaagaattgaagcatattattga---agatgatttggagaataaaaa 22391200  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 28183439 - 28183508
Alignment:
Q  60 acttggttattcttatcatatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgt 129  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28183439 actttgttattcttattttatgcatgtgtttatttcccattcatttattgcaggaattgagtgggaatgt 28183508  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 28081438 - 28081487
Alignment:
Q  83 atgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 132  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28081438 atgtgtttatttcccattcatttattgcaggaattgagtgggaatgtgga 28081487  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 28147234 - 28147307
Alignment:
Q  60 acttggttattcttatcatatgcat-gtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 132  Q
    |||| |||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  28147234 actttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtgga 28147307  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 17746823 - 17746683
Alignment:
Q  1 gtttgaataaacactctagtatatcaaatatctcaacaaccttttacc-atctctattgtacttg--------gttattcttatcatatgcatgtgttta 91  Q
    |||||||| |||||||| |||||||||||||||  |||||||||||   |||||||||||||||         |||||||||||  |||   ||||||||    
T  17746823 gtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttacagactttgttattcttattttatatgtgtgttta 17746724  T
Q  92 tttcccattcatttattgcaggaattgagggggaatgtgga 132  Q
    |||| |||||||||||||||||||||||| ||| |||||||    
T  17746723 tttctcattcatttattgcaggaattgagtggggatgtgga 17746683  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 19048143 - 19048003
Alignment:
Q  1 gtttgaataaacactctagtatatcaaatatctcaacaaccttttacc-atctctattgtacttg--------gttattcttatcatatgcatgtgttta 91  Q
    |||||||| |||||||| |||||||||||||||  |||||||||||   |||||||||||||||         |||||||||||  |||   ||||||||    
T  19048143 gtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttacagactttgttattcttattttatatgtgtgttta 19048044  T
Q  92 tttcccattcatttattgcaggaattgagggggaatgtgga 132  Q
    |||| |||||||||||||||||||||||| ||| |||||||    
T  19048043 tttctcattcatttattgcaggaattgagtggggatgtgga 19048003  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 27974226 - 27974291
Alignment:
Q  67 tattcttatcatatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 132  Q
    |||||||||  |||||||||||||||||| ||||| |||| || |||||||||| |||||||||||    
T  27974226 tattcttattttatgcatgtgtttatttctcattcgtttactgtaggaattgagtgggaatgtgga 27974291  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 27918358 - 27918446
Alignment:
Q  145 ttaagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 236  Q
    ||||||||||| || || || ||| | || ||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| |||||||    
T  27918358 ttaagatgtctgccgcagttgcttcatataagaattgaagaatgcaaagagttgaagtatattattga---agatgatttggagaataaaaa 27918446  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 28081765 - 28081817
Alignment:
Q  181 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 236  Q
    ||||||||||||||||||||| ||||||||||   ||||||||||||| |||||||    
T  28081765 gaagaatgcaaagagttaaagcatattattga---agatgatttggagaataaaaa 28081817  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 28482412 - 28482365
Alignment:
Q  69 ttcttatcatatgcatgtgtttatttcccattcatttattgcaggaat 116  Q
    |||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  28482412 ttcttattttatacatgtgtttatttcccattcatttattgtaggaat 28482365  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 28511224 - 28511177
Alignment:
Q  69 ttcttatcatatgcatgtgtttatttcccattcatttattgcaggaat 116  Q
    |||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  28511224 ttcttattttatacatgtgtttatttcccattcatttattgtaggaat 28511177  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 26210314 - 26210261
Alignment:
Q  181 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaat 237  Q
    ||||||||||||||||| ||| |||| ||||||   |||||||||||||||||||||    
T  26210314 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaat 26210261  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 26237558 - 26237505
Alignment:
Q  181 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaat 237  Q
    ||||||||||||||||| ||| |||| ||||||   |||||||||||||||||||||    
T  26237558 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaat 26237505  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 27918067 - 27918113
Alignment:
Q  83 atgtgtttatttcccattcatttattgcaggaattgagggggaatgt 129  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||||||||    
T  27918067 atgtgtttatttcccattcgtttattacaggatttgagtgggaatgt 27918113  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 26180823 - 26180771
Alignment:
Q  181 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 236  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  26180823 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaa 26180771  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 28053208 - 28053249
Alignment:
Q  91 atttcccattcatttattgcaggaattgagggggaatgtgga 132  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28053208 atttcacattcatttattgcaggaattgagtgggattgtgga 28053249  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 28063633 - 28063674
Alignment:
Q  91 atttcccattcatttattgcaggaattgagggggaatgtgga 132  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28063633 atttcacattcatttattgcaggaattgagtgggattgtgga 28063674  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 18027021 - 18026977
Alignment:
Q  88 tttatttcccattcatttattgcaggaattgagggggaatgtgga 132  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  18027021 tttatttcccattcatttgtggcaggaatggagtgggaatgtgga 18026977  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 27392763 - 27392719
Alignment:
Q  88 tttatttcccattcatttattgcaggaattgagggggaatgtgga 132  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  27392763 tttatttcccattcatttgtggcaggaatcgagcgggaatgtgga 27392719  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 8693606 - 8693518
Alignment:
Q  146 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaat 237  Q
    |||| |||||||| || || ||| | |||||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| ||||||||    
T  8693606 taaggtgtctaccacagttgctttatatgagaattgaagaatgcaaagagttgaagcatattattga---agatgatttggagaataaaaat 8693518  T

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Target: scaffold0257 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 17021 - 17073
Alignment:
Q  60 acttggttattcttatcatatgcatgtgtttatttcccattcatttattgcag 112  Q
    |||| |||||||||||  ||| |||||||||||||||||||||||||||||||    
T  17021 actttgttattcttattttatacatgtgtttatttcccattcatttattgcag 17073  T

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Target: scaffold0043 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 54989 - 54907
Alignment:
Q  151 tgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 236  Q
    ||||||||||| || ||| | || ||||| ||||||||||||||||| ||| |||| |||||   ||||||||||||| |||||||    
T  54989 tgtctacctcagttgcttcatataagaattgaagaatgcaaagagttgaagcatatgattga---agatgatttggagaataaaaa 54907  T

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