View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9573_high_3 (Length: 536)

Name: NF9573_high_3
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9573_high_3
NF9573_high_3
[»] chr3 (4 HSPs)
chr3 (17-515)||(51499679-51500177)
chr3 (409-514)||(3847694-3847800)
chr3 (437-512)||(11536376-11536452)
chr3 (444-489)||(34466672-34466717)
[»] chr5 (2 HSPs)
chr5 (386-491)||(33417558-33417665)
chr5 (437-511)||(36863615-36863689)
[»] chr6 (18 HSPs)
chr6 (422-514)||(5764388-5764480)
chr6 (422-514)||(5767923-5768015)
chr6 (422-514)||(5771458-5771550)
chr6 (422-514)||(5774993-5775085)
chr6 (422-514)||(5778528-5778620)
chr6 (422-514)||(5782063-5782155)
chr6 (422-514)||(5785598-5785690)
chr6 (422-514)||(5789133-5789225)
chr6 (422-514)||(5792668-5792760)
chr6 (422-514)||(5796203-5796295)
chr6 (422-514)||(5799738-5799830)
chr6 (422-514)||(5803273-5803365)
chr6 (422-514)||(5806808-5806900)
chr6 (422-514)||(5810343-5810435)
chr6 (422-514)||(5813878-5813970)
chr6 (422-514)||(5817413-5817505)
chr6 (409-514)||(8859287-8859389)
chr6 (414-495)||(6982990-6983071)
[»] chr7 (4 HSPs)
chr7 (446-515)||(39540534-39540603)
chr7 (445-511)||(38836324-38836390)
chr7 (388-512)||(49094359-49094483)
chr7 (445-489)||(34484006-34484050)
[»] chr4 (4 HSPs)
chr4 (445-517)||(12763241-12763313)
chr4 (445-517)||(2049169-2049241)
chr4 (386-515)||(41309980-41310105)
chr4 (469-517)||(10457445-10457493)
[»] chr1 (3 HSPs)
chr1 (386-515)||(13129217-13129342)
chr1 (445-517)||(3526038-3526107)
chr1 (445-512)||(34106324-34106389)
[»] chr2 (2 HSPs)
chr2 (241-333)||(43431766-43431858)
chr2 (413-491)||(45212885-45212964)
[»] chr8 (2 HSPs)
chr8 (409-489)||(40318454-40318533)
chr8 (413-515)||(40716068-40716171)


Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Complemental strand, 51500177 - 51499679
Alignment:
Q  17 aaatctcaacggtagcttcgatagcctgggctgtacatgcaactttctgcgtatttgacaagatcctttggtcgaggtaaatgagaagccagacctgtac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51500177 aaatctcaacggtagcttcgatagcctgggctgtacatgcaactttctgcgtatttgacaagatcctttggtcgaggtaaatgagaagccagacctgtac 51500078  T
Q  117 accaatcagagaagacaaaattaagggcaacaaaaaacaagacagttatgtttgaattgaacacatttcacatggaaactgaccaagttcgtatgtctta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51500077 accaatcagagaagacaaaattaagggcaacaaaaaacaagacagttatgtttgaattgaacacatttcacatggaaactgaccaagttcgtatgtctta 51499978  T
Q  217 gctgcaacactagcagcaatgttggctgatatctttctgatatttgtgaatggagggtatatcagtcccttatcatagttctcctgtgatacttgtgcag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499977 gctgcaacactagcagcaatgttggctgatatctttctgatatttgtgaatggagggtatatcagtcccttatcatagttctcctgtgatacttgtgcag 51499878  T
Q  317 ccaaagcttcagctgttttaaataaaataaattggttagcattcaagtcgaaactaatatgtctgattaattagaattctttaggggttgtttgcagccc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51499877 ccaaagcttcagctgttttaaataaaataaattggttagcattcaagtcgaaactactatgtctgattaattagaattctttaggggttgtttgcagccc 51499778  T
Q  417 tttgcttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcctg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  51499777 tttgcttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacagattcaggccttaatcctg 51499679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 409 - 514
Target Start/End: Complemental strand, 3847800 - 3847694
Alignment:
Q  409 tgcagccctttgctttt-atggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggcct 507  Q
    |||| |||||||||||| |||| || ||||| || |||||||||| || ||||||||||||| ||||||||| ||||||| ||||||| |  ||||||||    
T  3847800 tgcaaccctttgcttttcatggtagactccttttcgtttttgttgctataggatagccttagacttcctttccttcttttttgtaaacagggtcaggcct 3847701  T
Q  508 taatcct 514  Q
    |||||||    
T  3847700 taatcct 3847694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 437 - 512
Target Start/End: Original strand, 11536376 - 11536452
Alignment:
Q  437 ctctttgtttt-tgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatc 512  Q
    ||||||||||| ||||| ||||||| ||||||| |||||||||||||||  ||||||||| | ||||||||||||||    
T  11536376 ctctttgttttatgttgctaaaggaaagccttatgcttcctttctttctaatgtgtaaacaggttcaggccttaatc 11536452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 489
Target Start/End: Complemental strand, 34466717 - 34466672
Alignment:
Q  444 tttttgttgataaaggatagccttaggcttcctttctttcttttgt 489  Q
    ||||||||| || ||||||||||| |||||||||||| ||||||||    
T  34466717 tttttgttgttataggatagcctttggcttcctttctctcttttgt 34466672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 386 - 491
Target Start/End: Original strand, 33417558 - 33417665
Alignment:
Q  386 attagaattctttaggggtt-gtttgcagccctttgcttttatggcaggctcctctttgtttttgttgataaa-ggatagccttaggcttcctttctttc 483  Q
    |||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  33417558 attagaattctttaggggtttgttttcggccctttgcttttatggcagactcctctttgtttttgttgttaaagggatagccttaggcttcctttctttc 33417657  T
Q  484 ttttgtgt 491  Q
    ||||||||    
T  33417658 ttttgtgt 33417665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 511
Target Start/End: Complemental strand, 36863689 - 36863615
Alignment:
Q  437 ctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaat 511  Q
    |||||||||||||||| || ||||||| ||| |||||||||||| |||||| || ||||   |||||||||||||    
T  36863689 ctctttgtttttgttgctataggatagtctttggcttcctttctctcttttatgcaaacatgttcaggccttaat 36863615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5764480 - 5764388
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5764480 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5764388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5768015 - 5767923
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5768015 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5767923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5771550 - 5771458
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5771550 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5771458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5775085 - 5774993
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5775085 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5774993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5778620 - 5778528
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5778620 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5778528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5782155 - 5782063
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5782155 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5782063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5785690 - 5785598
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5785690 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5785598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5789225 - 5789133
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5789225 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5789133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5792760 - 5792668
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5792760 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5792668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5796295 - 5796203
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5796295 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5796203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5799830 - 5799738
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5799830 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5799738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5803365 - 5803273
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5803365 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5803273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5806900 - 5806808
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5806900 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5806808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5810435 - 5810343
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5810435 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5810343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5813970 - 5813878
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5813970 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5813878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 5817505 - 5817413
Alignment:
Q  422 ttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcct 514  Q
    |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||| | ||||  ||||||||||    
T  5817505 ttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcct 5817413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 514
Target Start/End: Original strand, 8859287 - 8859389
Alignment:
Q  409 tgcagccctttgcttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggcctt 508  Q
    ||||||||| ||||||  ||| ||||| | ||||||||| |||  || ||||||||||| |||||||||||| |||||  ||||||| | ||||||||||    
T  8859287 tgcagccctatgctttcttggtaggctacactttgtttt-gtttctataggatagcctttggcttcctttctctcttt--tgtaaacagattcaggcctt 8859383  T
Q  509 aatcct 514  Q
    ||||||    
T  8859384 aatcct 8859389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 6982990 - 6983071
Alignment:
Q  414 ccctttgctttt-atggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaac 495  Q
    |||||||||| | |||||||| ||||||||||||  |||| ||||||||||| |||||||||  |||||| | ||||||||||    
T  6982990 ccctttgcttgtcatggcaggttcctctttgtttc-gttgctaaaggatagctttaggcttcaattctttatgttgtgtaaac 6983071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 446 - 515
Target Start/End: Original strand, 39540534 - 39540603
Alignment:
Q  446 tttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcctg 515  Q
    ||||||| || |||||||||||||||||||||| |||||||||||||||  | |||||||||||||||||    
T  39540534 tttgttgctataggatagccttaggcttcctttatttcttttgtgtaaaaaggttcaggccttaatcctg 39540603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 511
Target Start/End: Original strand, 38836324 - 38836390
Alignment:
Q  445 ttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaat 511  Q
    |||||||| || ||||||||||| |||||||||||| |||||||||||||| | ||||| |||||||    
T  38836324 ttttgttgctataggatagcctttggcttcctttctctcttttgtgtaaacaggttcagaccttaat 38836390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 512
Target Start/End: Complemental strand, 49094483 - 49094359
Alignment:
Q  388 tagaattctttaggggttgtttgcagccctttgctttt-atggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttt 486  Q
    |||||||||||||||||   | |||||| ||||||||| ||| |||| | |||||||||||||||| || |||||| |||| || ||| ||||| |||||    
T  49094483 tagaattctttaggggtacgt-gcagccatttgcttttcatgccaggatactctttgtttttgttgctataggataacctttggtttcttttctctcttt 49094385  T
Q  487 tgtgtaaacggcttcaggccttaatc 512  Q
    ||| |||||   |||| |||||||||    
T  49094384 tgtataaacaagttcaagccttaatc 49094359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 34484006 - 34484050
Alignment:
Q  445 ttttgttgataaaggatagccttaggcttcctttctttcttttgt 489  Q
    |||||||| || |||||||||||||||||||||||| ||||||||    
T  34484006 ttttgttgctataggatagccttaggcttcctttctctcttttgt 34484050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 445 - 517
Target Start/End: Complemental strand, 12763313 - 12763241
Alignment:
Q  445 ttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcctgat 517  Q
    |||||||| || |||||||| || |||||||||||| |||||||||||||| | |||||||||||||||||||    
T  12763313 ttttgttgctataggatagcttttggcttcctttctctcttttgtgtaaacaggttcaggccttaatcctgat 12763241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 445 - 517
Target Start/End: Original strand, 2049169 - 2049241
Alignment:
Q  445 ttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcctgat 517  Q
    |||||||| || ||||||||||| |||||||||||| ||||||||| |||  | |||||||||||||||||||    
T  2049169 ttttgttgctataggatagcctttggcttcctttctctcttttgtgcaaataggttcaggccttaatcctgat 2049241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 515
Target Start/End: Original strand, 41309980 - 41310105
Alignment:
Q  386 attagaattctttaggggttgtttgcagccctttgcttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttctt 485  Q
    ||||||||||||||||||   | ||||||||| ||||||  ||||||||| | ||||| |||||||| || ||| ||||||| ||| |||||||| ||||    
T  41309980 attagaattctttagggg-catgtgcagccctatgctttcttggcaggctacactttg-ttttgttgctatagggtagcctttggcgtcctttctctctt 41310077  T
Q  486 ttgtgtaaacggcttcaggccttaatcctg 515  Q
    |  ||||||| | |||| ||||||||||||    
T  41310078 t--tgtaaacaggttcaagccttaatcctg 41310105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 517
Target Start/End: Complemental strand, 10457493 - 10457445
Alignment:
Q  469 ggcttcctttctttcttttgtgtaaacggcttcaggccttaatcctgat 517  Q
    |||||||||||| ||| |||||||||| | |||||||||||||||||||    
T  10457493 ggcttcctttctctctcttgtgtaaacaggttcaggccttaatcctgat 10457445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 515
Target Start/End: Original strand, 13129217 - 13129342
Alignment:
Q  386 attagaattctttaggggttgtttgcagccctttgcttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttctt 485  Q
    ||||||||||||||||||   | ||||||||| ||||||  ||||||||| | ||||||||| |||| || ||| ||||||| ||||||||||||| |||    
T  13129217 attagaattctttaggggca-tgtgcagccctatgctttcttggcaggctacactttgtttt-gttgctatagggtagcctttggcttcctttcttactt 13129314  T
Q  486 ttgtgtaaacggcttcaggccttaatcctg 515  Q
    |  ||||||| | |||||||||||||||||    
T  13129315 t--tgtaaacaggttcaggccttaatcctg 13129342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 517
Target Start/End: Original strand, 3526038 - 3526107
Alignment:
Q  445 ttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatcctgat 517  Q
    |||||||| || |||||| |||| |||||||||||| ||||||||  |||| | |||||||||||||||||||    
T  3526038 ttttgttgctataggataacctt-ggcttcctttctctcttttgt--aaacaggttcaggccttaatcctgat 3526107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 34106389 - 34106324
Alignment:
Q  445 ttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaatc 512  Q
    |||||||| || ||| ||||||| |||||||||||| |||||  ||||||| | ||||||||||||||    
T  34106389 ttttgttgctatagggtagcctttggcttcctttctctcttt--tgtaaacaggttcaggccttaatc 34106324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 333
Target Start/End: Original strand, 43431766 - 43431858
Alignment:
Q  241 gctgatatctttctgatatttgtgaatggagggtatatcagtcccttatcatagttctcctgtgatacttgtgcagccaaagcttcagctgtt 333  Q
    ||||||||||||||||| || |||||||| ||| ||||||  ||||| ||| ||||||| | |||||||||| ||||||| || |||||||||    
T  43431766 gctgatatctttctgatgttggtgaatggtgggaatatcaaacccttctcaaagttctcttctgatacttgttcagccaatgcctcagctgtt 43431858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 491
Target Start/End: Original strand, 45212885 - 45212964
Alignment:
Q  413 gccctttgctttt-atggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgt 491  Q
    ||||||||||||| |||||||| | |||||| ||||||||| || |||||| | || |||||||||||| ||||||||||    
T  45212885 gccctttgcttttcatggcaggttactctttatttttgttgctataggatatcatttggcttcctttctctcttttgtgt 45212964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 489
Target Start/End: Complemental strand, 40318533 - 40318454
Alignment:
Q  409 tgcagccctttgcttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgt 489  Q
    |||| |||| ||||||  ||||||||| | ||||||||| |||| || ||||||||||| |||||||||||| ||||||||    
T  40318533 tgcaaccctatgctttcttggcaggctacactttgtttt-gttgctataggatagcctttggcttcctttctctcttttgt 40318454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 515
Target Start/End: Original strand, 40716068 - 40716171
Alignment:
Q  413 gccctttgctttt-atggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacggcttcaggccttaat 511  Q
    ||||||||||||| ||| ||  || |||||||||||||||  || |||||| ||||   |||||||||| |||||||||||||  | |||| ||||||||    
T  40716068 gccctttgcttttcatgacaaccttctctttgtttttgttactacaggataacctttaccttcctttctctcttttgtgtaaataggttcatgccttaat 40716167  T
Q  512 cctg 515  Q
    ||||    
T  40716168 cctg 40716171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University