View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9573_high_4 (Length: 498)

Name: NF9573_high_4
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9573_high_4
NF9573_high_4
[»] chr4 (21 HSPs)
chr4 (320-476)||(570356-570512)
chr4 (325-480)||(1524429-1524584)
chr4 (320-432)||(1548361-1548474)
chr4 (325-441)||(12116518-12116634)
chr4 (386-441)||(1519146-1519201)
chr4 (333-432)||(1600468-1600567)
chr4 (386-441)||(8184034-8184089)
chr4 (386-441)||(8187095-8187150)
chr4 (386-474)||(553486-553574)
chr4 (376-432)||(1537761-1537817)
chr4 (325-480)||(55908671-55908826)
chr4 (391-432)||(659758-659799)
chr4 (325-426)||(53761715-53761816)
chr4 (381-432)||(1552766-1552817)
chr4 (386-441)||(7225887-7225942)
chr4 (386-432)||(1489365-1489411)
chr4 (386-432)||(12121461-12121507)
chr4 (338-374)||(371027-371063)
chr4 (364-432)||(532238-532306)
chr4 (386-426)||(644885-644925)
chr4 (386-426)||(1513411-1513451)
[»] chr8 (6 HSPs)
chr8 (330-476)||(21235563-21235709)
chr8 (381-477)||(18315272-18315368)
chr8 (386-440)||(17636405-17636459)
chr8 (386-480)||(27922509-27922603)
chr8 (386-440)||(28246299-28246353)
chr8 (372-441)||(17628004-17628073)
[»] chr6 (21 HSPs)
chr6 (365-473)||(12102274-12102382)
chr6 (327-441)||(6394904-6395018)
chr6 (325-441)||(6432201-6432317)
chr6 (327-426)||(6426566-6426665)
chr6 (327-441)||(6410046-6410160)
chr6 (223-263)||(12102377-12102417)
chr6 (1-39)||(12102743-12102781)
chr6 (324-432)||(6589265-6589373)
chr6 (381-432)||(9410751-9410802)
chr6 (366-432)||(6416015-6416081)
chr6 (386-440)||(11936279-11936333)
chr6 (386-440)||(11948259-11948313)
chr6 (386-475)||(28935055-28935144)
chr6 (386-438)||(6423260-6423312)
chr6 (343-431)||(7119207-7119295)
chr6 (343-431)||(7131685-7131773)
chr6 (380-432)||(9411404-9411456)
chr6 (325-431)||(6402910-6403016)
chr6 (165-211)||(28029057-28029103)
chr6 (97-138)||(12102683-12102724)
chr6 (364-432)||(6594588-6594656)
[»] chr3 (7 HSPs)
chr3 (325-432)||(51113724-51113831)
chr3 (364-480)||(51120875-51120991)
chr3 (327-432)||(13470677-13470782)
chr3 (386-440)||(1657292-1657346)
chr3 (401-443)||(27005791-27005833)
chr3 (393-443)||(36811038-36811088)
chr3 (338-374)||(514684-514720)
[»] chr1 (1 HSPs)
chr1 (338-432)||(19468455-19468549)
[»] chr5 (2 HSPs)
chr5 (389-479)||(41901542-41901632)
chr5 (327-480)||(32267476-32267626)
[»] chr2 (2 HSPs)
chr2 (386-441)||(32785776-32785831)
chr2 (325-480)||(1037607-1037762)
[»] chr7 (2 HSPs)
chr7 (327-431)||(10614643-10614747)
chr7 (370-426)||(15092139-15092195)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 320 - 476
Target Start/End: Complemental strand, 570512 - 570356
Alignment:
320 ttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaa 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || |||||| |||||||||||    
570512 ttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaa 570413  T
420 cttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcg 476  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||    
570412 cttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcg 570356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 1524429 - 1524584
Alignment:
325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    ||||||||||||||||||||||||||||||||  |||| || ||| |  |||| |||||| |||||||||||| ||||||  ||||||||||||| ||||    
1524429 agatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaacttcatggaatgaactttgaagttcccaatttggaggtgttgaatttgt 1524528  T
425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtggg 480  Q
    ||| |||| | |||||| | |||  || |||| |||| ||| ||||||||||||||    
1524529 cacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtggg 1524584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 432
Target Start/End: Original strand, 1548361 - 1548474
Alignment:
320 ttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcat-ggagtgaactttgaagctcccaaactggaggtgttga 418  Q
    ||||||||||||||||  |||| || |||||||||||||   | | ||||||||| || | | ||| |||||||||||  ||||||||||||||||||||    
1548361 ttttaagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttga 1548460  T
419 acttgtcacataca 432  Q
    ||||||||||||||    
1548461 acttgtcacataca 1548474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 441
Target Start/End: Original strand, 12116518 - 12116634
Alignment:
325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||||| |||||||  ||||||||  |||| |||||| | ||||||| | || |||||||||| | ||| ||  | ||||||||||||||||    
12116518 agatgttgtaaactaaggcattaaaacttagcctactgttcaaaaataaaactgcgtagaatgaactttgatgttccaaatttagaggtgttgaacttgt 12116617  T
425 cacatacatgagttgat 441  Q
    |||||||| | ||||||    
12116618 cacatacaagtgttgat 12116634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 1519146 - 1519201
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgat 441  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||    
1519146 tgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgat 1519201  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 1600567 - 1600468
Alignment:
333 taaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||| |||| |||||||||||||| || || |||| | |||| ||||  ||| |||||||||||| ||  |||||||||||||||||||||||| |||||    
1600567 taaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatataca 1600468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 8184034 - 8184089
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgat 441  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||    
8184034 tgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgat 8184089  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 8187095 - 8187150
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgat 441  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| ||||||||    
8187095 tgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgat 8187150  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 474
Target Start/End: Complemental strand, 553574 - 553486
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgt 474  Q
    |||||||| ||| || |||||||||||||||||||||||||  |||| |||||||| | |||| ||   || |||||||||||||||||    
553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgt 553486  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 1537761 - 1537817
Alignment:
376 ctgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    ||||||||| |||||||||||| ||||||||| || ||||||||||||||| |||||    
1537761 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 1537817  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 55908671 - 55908826
Alignment:
325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||  |||| |||||||| |||||  |||| |||| ||||||||| | | || | |||||| ||| |||  || | |||||||| |||||||    
55908671 agatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgt 55908770  T
425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtggg 480  Q
    |||||||||| |||||| | |||  || |||| |||| ||||||| |||| |||||    
55908771 cacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtggg 55908826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 659799 - 659758
Alignment:
391 tttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
659799 tttgaagttcccaaactagaggtgttgaacttgtcacataca 659758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 426
Target Start/End: Original strand, 53761715 - 53761816
Alignment:
325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||  |||||||||||||||||||  | || |||| |||||| ||   |||| ||||||||| || |||||| || |||| |||||||||||    
53761715 agatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaagctagaggcgttgaacttgt 53761814  T
425 ca 426  Q
    ||    
53761815 ca 53761816  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 1552766 - 1552817
Alignment:
381 tggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||| |||||||||||  |||||||||||| |||||||| ||||||||||||    
1552766 tggactgaactttgaaattcccaaactggaagtgttgaatttgtcacataca 1552817  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 7225887 - 7225942
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgat 441  Q
    |||||||||||| || | || ||||||| |||||||||||||||||| ||||||||    
7225887 tgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgat 7225942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 1489365 - 1489411
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||||||||||| ||||||||| || ||||||||||||||| |||||    
1489365 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 1489411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 12121461 - 12121507
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||||||||||| ||||||||| || ||||||||||||||| |||||    
12121461 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 12121507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 371063 - 371027
Alignment:
338 ttaggcatttgaacttagctcactgctcaaaagtgaa 374  Q
    ||||||||||||||||||| |||||||||| ||||||    
371063 ttaggcatttgaacttagcccactgctcaagagtgaa 371027  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 532306 - 532238
Alignment:
364 tcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||| |||||| || | |||| ||||||||||||  ||||| || |||||||||||||||||| |||||    
532306 tcaagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatataca 532238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 426
Target Start/End: Complemental strand, 644925 - 644885
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||||||| ||||||||||||||||||  ||||||||    
644925 tgaactttgaagttcccaaactggaggtgttagacttgtca 644885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 1513411 - 1513451
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||||||| ||||||||| || |||||||||||||||    
1513411 tgaactttgaagttcccaaactagaagtgttgaacttgtca 1513451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 330 - 476
Target Start/End: Complemental strand, 21235709 - 21235563
Alignment:
330 ttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacat 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| ||    
21235709 ttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgtgtggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatat 21235610  T
430 acatgagttgataacgaagaacgctatctgatttcaaagagttgtcg 476  Q
    ||| |||||||||||||||||| |||| ||||||||||||| |||||    
21235609 acaggagttgataacgaagaactctatttgatttcaaagagctgtcg 21235563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 18315272 - 18315368
Alignment:
381 tggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgt 477  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||| | |||| || |||| |||| |||||||||||||||    
18315272 tggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgt 18315368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 17636405 - 17636459
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttga 440  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||    
17636405 tgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttga 17636459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 27922603 - 27922509
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtggg 480  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||   |||||| | |||| ||  ||| |||| |||||||||||| |||||    
27922603 tgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtggg 27922509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 28246299 - 28246353
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttga 440  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||| |||||||    
28246299 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 28246353  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 17628004 - 17628073
Alignment:
372 gaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgat 441  Q
    |||| |||| |||||||||||| ||  | | ||| |||||||||||||||||||||||||  ||||||||    
17628004 gaaaatgcaaggagtgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgat 17628073  T

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Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 365 - 473
Target Start/End: Complemental strand, 12102382 - 12102274
Alignment:
365 caaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttc 464  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
12102382 caaaagtgaaactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttc 12102283  T
465 aaagagttg 473  Q
    |||||||||    
12102282 aaagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 441
Target Start/End: Complemental strand, 6395018 - 6394904
Alignment:
327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    ||||||||| ||||  |||||||||||||||  ||| |||||||||||||| |||||| ||||||||| || |||| | |||||||||||||||||||||    
6395018 atgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtca 6394919  T
427 catacatgagttgat 441  Q
     ||||| | ||||||    
6394918 aatacaagcgttgat 6394904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 325 - 441
Target Start/End: Complemental strand, 6432317 - 6432201
Alignment:
325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    ||||||||||||||||  ||||||||||||||  | ||   ||||||||| || |||||| |||||||||||| |||||| ||| |||||||||||||||    
6432317 agatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgt 6432218  T
425 cacatacatgagttgat 441  Q
    || ||||| | ||||||    
6432217 caaatacaagcgttgat 6432201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 327 - 426
Target Start/End: Complemental strand, 6426665 - 6426566
Alignment:
327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    ||||||||| ||||  |||||||||||||||  ||| ||||| |||||||| |||||| ||||||||| || |||| | |||||||||||||| ||||||    
6426665 atgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtca 6426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 441
Target Start/End: Complemental strand, 6410160 - 6410046
Alignment:
327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    ||||||||| |||| ||||||| |||||||  | |||  ||||||||| || |||||| |||||||||||| |||||| ||| |||||||||||| ||||    
6410160 atgttgtaagcttaagcatttggacttagcctattgcaaaaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtca 6410061  T
427 catacatgagttgat 441  Q
     ||||| | ||||||    
6410060 aatacaagcgttgat 6410046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 12102417 - 12102377
Alignment:
223 gcagaaaatcactagagctagtcactatagtggcgcaaaag 263  Q
    |||||||||||||||||||||||||||||||||||||||||    
12102417 gcagaaaatcactagagctagtcactatagtggcgcaaaag 12102377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12102781 - 12102743
Alignment:
1 cattacctgaccggagcatcactcttgaggtccttgtac 39  Q
    |||||||||||||||||||||||||||||||||||||||    
12102781 cattacctgaccggagcatcactcttgaggtccttgtac 12102743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 432
Target Start/End: Original strand, 6589265 - 6589373
Alignment:
324 aagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttg 423  Q
    ||||||||||||  |||||||||||||||||||   |||    |||||||| || | |||| ||||||||| || |||||  ||||||||||||||||||    
6589265 aagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttg 6589364  T
424 tcacataca 432  Q
    ||| |||||    
6589365 tcaaataca 6589373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 432
Target Start/End: Complemental strand, 9410802 - 9410751
Alignment:
381 tggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||| |||||||||||||||||||  ||||||||||||| ||||||||||||    
9410802 tggattgaactttgaagctcccaagttggaggtgttgaatttgtcacataca 9410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 6416081 - 6416015
Alignment:
366 aaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    ||||||||| || |||||| || |||||| || |||||| ||||||||||||||||||||| |||||    
6416081 aaaagtgaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaataca 6416015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 11936279 - 11936333
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttga 440  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||| |||||||    
11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 11936333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 11948259 - 11948313
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttga 440  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||| |||||||    
11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 11948313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 28935144 - 28935055
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtc 475  Q
    |||| ||||| | |||| |||| |||||||||||||||||||||||| |||||||  | |||| || |  | ||||||||||||||||||    
28935144 tgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 28935055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 6423312 - 6423260
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagtt 438  Q
    |||||||| ||| |||||| ||||||||||||||||||||| ||||| |||||    
6423312 tgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagtt 6423260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 431
Target Start/End: Complemental strand, 7119295 - 7119207
Alignment:
343 catttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatac 431  Q
    |||||||||||||| ||||| |||| |||||| || | |||| |||||||||  | || | | ||||||||||||||||||||| ||||    
7119295 catttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatac 7119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 431
Target Start/End: Complemental strand, 7131773 - 7131685
Alignment:
343 catttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatac 431  Q
    |||||||||||||| ||||| |||| |||||| || | |||| |||||||||  | || | | ||||||||||||||||||||| ||||    
7131773 catttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatac 7131685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 9411456 - 9411404
Alignment:
380 atggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    ||||| |||||||||| | |||||| ||||||||||||||||||||| |||||    
9411456 atggattgaactttgaggttcccaagctggaggtgttgaacttgtcatataca 9411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 431
Target Start/End: Complemental strand, 6403016 - 6402910
Alignment:
325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||  ||||||||||||||||| ||   || |||| |||||| || | |||| | ||||||| || |||| |||| || |||||||||||||    
6403016 agatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaagtgttgaacttgt 6402917  T
425 cacatac 431  Q
    || ||||    
6402916 cagatac 6402910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 28029057 - 28029103
Alignment:
165 catgttattggttcattctggtacctcttcggtctagaggcgagtaa 211  Q
    |||||| ||||||||| |||||||||||| |||||||||| ||||||    
28029057 catgttgttggttcatgctggtacctctttggtctagaggtgagtaa 28029103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 12102724 - 12102683
Alignment:
97 cgggctcactttcgagtcattttgggcaaatcacataataat 138  Q
    |||||||||||| |||| ||||||||||||||||||| ||||    
12102724 cgggctcacttttgagttattttgggcaaatcacatattaat 12102683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 6594588 - 6594656
Alignment:
364 tcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||| |||||| || |||||| | ||||||  || ||||||||||||||||||| |||||||| |||||    
6594588 tcaagagtgaagctacatggaataaactttttagttcccaaactggaggtgttgtacttgtcaaataca 6594656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 51113724 - 51113831
Alignment:
325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||| ||||||||||||| |||||| |||| |||||| |||| || | |||| |||||||||||||||||||||||||||||||  ||||||    
51113724 agatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgt 51113823  T
425 cacataca 432  Q
    || |||||    
51113824 caaataca 51113831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 364 - 480
Target Start/End: Original strand, 51120875 - 51120991
Alignment:
364 tcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgattt 463  Q
    |||| |||||||||||||||| |||||||||||| || |||| ||||||||||||||||||| |||||| |||||||| | ||| |||  ||| | || |    
51120875 tcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatct 51120974  T
464 caaagagttgtcgtggg 480  Q
    |||||||||||||||||    
51120975 caaagagttgtcgtggg 51120991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 13470677 - 13470782
Alignment:
327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||||  |||||||||||||||||||  | ||   ||||||||| || | |||| |||||||||  | |||||| |||||||||||||||||||||    
13470677 atgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtca 13470776  T
427 cataca 432  Q
     |||||    
13470777 aataca 13470782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 1657346 - 1657292
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttga 440  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||| |||||||    
1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 1657292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 27005791 - 27005833
Alignment:
401 ccaaactggaggtgttgaacttgtcacatacatgagttgataa 443  Q
    ||||||||||||| |||||||||||||||||| || |||||||    
27005791 ccaaactggaggtcttgaacttgtcacatacaagaattgataa 27005833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 36811038 - 36811088
Alignment:
393 tgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataa 443  Q
    ||||||| ||||||||||||||||||||||||| ||| || || |||||||    
36811038 tgaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataa 36811088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 514684 - 514720
Alignment:
338 ttaggcatttgaacttagctcactgctcaaaagtgaa 374  Q
    ||||||||||||||||||| |||||||||| ||||||    
514684 ttaggcatttgaacttagcccactgctcaagagtgaa 514720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 19468455 - 19468549
Alignment:
338 ttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||||||||| |||||||| ||||| |||| |||||| || | |||||||||||||| || |||||| |||||||||||||| |||||| |||||    
19468455 ttaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagataca 19468549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 479
Target Start/End: Original strand, 41901542 - 41901632
Alignment:
389 actttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgg 479  Q
    ||||||||| |||||||||||||||||||||||||||| |||||  ||||||| | |||| ||  ||| |||| |||||||||||| ||||    
41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtgg 41901632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 480
Target Start/End: Complemental strand, 32267626 - 32267476
Alignment:
327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||||  |||| |||||||||||| | || || |||| |||||||||  |   | |||||||||||| ||||||| ||||||| ||||||||||||    
32267626 atgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaactaga---aatgaactttgaagttcccaaattggaggtattgaacttgtca 32267530  T
427 catacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtggg 480  Q
    || |||  ||||||| | |||| ||  ||| |||| |||||||||||| |||||    
32267529 caaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtggg 32267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 32785776 - 32785831
Alignment:
386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgat 441  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| || |||||    
32785776 tgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgat 32785831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 1037607 - 1037762
Alignment:
325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||  |||| |||||||| |||||  |||  |||| ||||||||| | | || | |||||| ||| |||  || | |||||||| |||||||    
1037607 agatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgt 1037706  T
425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtggg 480  Q
    |||||||||| |||||| | |||  || |||| |||| ||||||| |||| |||||    
1037707 cacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtggg 1037762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 431
Target Start/End: Complemental strand, 10614747 - 10614643
Alignment:
327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||||  |||||||||||||||||||  | ||   ||||||||| || | |||| ||||| |||  | |||||| |||||||||||||||||||||    
10614747 atgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtca 10614648  T
427 catac 431  Q
     ||||    
10614647 aatac 10614643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 15092139 - 15092195
Alignment:
370 gtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||| |||||| ||||||||| || |||| | |||||||||||||| ||||||    
15092139 gtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtca 15092195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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