View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9573_high_5 (Length: 418)

Name: NF9573_high_5
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9573_high_5
NF9573_high_5
[»] chr1 (16 HSPs)
chr1 (197-361)||(21971882-21972046)
chr1 (1-64)||(28165095-28165158)
chr1 (1-64)||(52336841-52336904)
chr1 (3-44)||(31152550-31152591)
chr1 (3-44)||(45691591-45691632)
chr1 (109-184)||(32153756-32153831)
chr1 (108-186)||(29437814-29437892)
chr1 (1-51)||(42454854-42454905)
chr1 (109-178)||(4280094-4280163)
chr1 (109-170)||(17483733-17483794)
chr1 (109-186)||(50225378-50225457)
chr1 (4-49)||(9851798-9851843)
chr1 (144-185)||(36674259-36674300)
chr1 (109-184)||(4389608-4389684)
chr1 (1-53)||(25130228-25130280)
chr1 (109-184)||(27479599-27479673)
[»] chr3 (27 HSPs)
chr3 (108-186)||(48921668-48921746)
chr3 (109-186)||(16869537-16869615)
chr3 (109-186)||(1330967-1331043)
chr3 (3-55)||(17003556-17003608)
chr3 (14-64)||(28695674-28695724)
chr3 (1-63)||(36659299-36659361)
chr3 (1-64)||(40344902-40344965)
chr3 (109-186)||(10284611-10284691)
chr3 (108-178)||(42044220-42044290)
chr3 (2-55)||(47860703-47860756)
chr3 (108-184)||(15996735-15996811)
chr3 (109-184)||(30819878-30819953)
chr3 (109-149)||(38670789-38670829)
chr3 (3-43)||(42279227-42279267)
chr3 (4-64)||(45261479-45261539)
chr3 (109-184)||(48904225-48904300)
chr3 (109-186)||(12918798-12918875)
chr3 (109-186)||(15095198-15095275)
chr3 (152-186)||(29383057-29383091)
chr3 (152-186)||(35938408-35938442)
chr3 (108-184)||(16776849-16776925)
chr3 (1-42)||(43320129-43320170)
chr3 (109-149)||(10284004-10284044)
chr3 (3-55)||(22923748-22923800)
chr3 (12-64)||(32211791-32211843)
chr3 (112-184)||(34811318-34811389)
chr3 (109-149)||(48922406-48922446)
[»] chr6 (14 HSPs)
chr6 (1-64)||(180455-180518)
chr6 (1-63)||(34837121-34837183)
chr6 (92-186)||(180546-180646)
chr6 (1-64)||(7926920-7926983)
chr6 (1-64)||(12143689-12143752)
chr6 (243-357)||(14459129-14459243)
chr6 (108-186)||(4746088-4746169)
chr6 (267-348)||(20794130-20794211)
chr6 (3-55)||(2950133-2950185)
chr6 (1-55)||(1856865-1856919)
chr6 (11-41)||(31116446-31116476)
chr6 (1-64)||(6454334-6454398)
chr6 (109-184)||(11161851-11161926)
chr6 (13-41)||(31117373-31117401)
[»] chr4 (15 HSPs)
chr4 (3-64)||(31707322-31707383)
chr4 (108-186)||(15496130-15496208)
chr4 (109-186)||(17781384-17781462)
chr4 (109-186)||(52575621-52575696)
chr4 (109-184)||(18872717-18872792)
chr4 (109-186)||(19839911-19839990)
chr4 (106-149)||(24177417-24177460)
chr4 (109-186)||(17261344-17261422)
chr4 (1-63)||(44720553-44720615)
chr4 (109-186)||(24178019-24178095)
chr4 (3-55)||(47231552-47231603)
chr4 (109-179)||(7698435-7698506)
chr4 (1-55)||(18838866-18838921)
chr4 (1-36)||(42312399-42312434)
chr4 (109-184)||(39797434-39797509)
[»] chr8 (13 HSPs)
chr8 (1-64)||(8251351-8251414)
chr8 (3-60)||(2207887-2207944)
chr8 (1-64)||(2520103-2520166)
chr8 (3-63)||(31658969-31659029)
chr8 (1-51)||(16890251-16890301)
chr8 (1-55)||(2152436-2152490)
chr8 (109-184)||(18111937-18112012)
chr8 (3-42)||(30653623-30653662)
chr8 (109-170)||(13568880-13568942)
chr8 (2-64)||(43594385-43594446)
chr8 (109-149)||(10637142-10637182)
chr8 (109-184)||(16998996-16999072)
chr8 (109-184)||(31619210-31619285)
[»] chr7 (16 HSPs)
chr7 (1-64)||(41508215-41508278)
chr7 (1-64)||(12485391-12485454)
chr7 (1-64)||(12506823-12506886)
chr7 (1-55)||(20949187-20949241)
chr7 (2-64)||(45072488-45072550)
chr7 (269-342)||(39844725-39844798)
chr7 (119-186)||(24282038-24282108)
chr7 (1-55)||(7307556-7307610)
chr7 (240-348)||(22196758-22196866)
chr7 (240-348)||(22240955-22241063)
chr7 (109-170)||(1574719-1574780)
chr7 (17-53)||(508601-508637)
chr7 (109-186)||(27813496-27813577)
chr7 (108-184)||(32118126-32118201)
chr7 (15-63)||(34470187-34470235)
chr7 (108-184)||(35569614-35569689)
[»] chr5 (9 HSPs)
chr5 (209-373)||(1160228-1160392)
chr5 (1-64)||(6688904-6688967)
chr5 (3-53)||(18705116-18705166)
chr5 (3-62)||(2225697-2225756)
chr5 (109-186)||(39971014-39971091)
chr5 (108-186)||(9977980-9978060)
chr5 (109-184)||(20142221-20142296)
chr5 (109-177)||(20186501-20186569)
chr5 (109-149)||(34258672-34258712)
[»] scaffold0024 (1 HSPs)
scaffold0024 (2-64)||(154456-154518)
[»] chr2 (19 HSPs)
chr2 (3-55)||(38496590-38496642)
chr2 (3-53)||(3268915-3268965)
chr2 (3-53)||(3269474-3269524)
chr2 (3-53)||(3270033-3270083)
chr2 (109-184)||(9701070-9701145)
chr2 (3-55)||(40503992-40504044)
chr2 (2-41)||(21794953-21794992)
chr2 (1-64)||(38214228-38214291)
chr2 (1-64)||(39063564-39063627)
chr2 (1-64)||(40664350-40664413)
chr2 (14-64)||(21229611-21229661)
chr2 (1-55)||(2761626-2761682)
chr2 (109-184)||(7116261-7116336)
chr2 (109-184)||(12890170-12890245)
chr2 (1-44)||(32872456-32872499)
chr2 (1-55)||(16781376-16781430)
chr2 (108-168)||(2060315-2060376)
chr2 (117-186)||(7016090-7016158)
chr2 (109-184)||(3095299-3095374)
[»] scaffold0088 (1 HSPs)
scaffold0088 (3-64)||(51390-51451)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 197 - 361
Target Start/End: Original strand, 21971882 - 21972046
Alignment:
Q  197 ttgtatttgaagttggaaaggagggaggttttggaggttaatcgtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaa 296  Q
    |||||||| ||||||||| |||||||| || |||||||   | | ||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| |    
T  21971882 ttgtatttaaagttggaagggagggagattctggaggtgtcttgaccggagggggaacggagggtgtttcgaaaaatttggaaaacgggggcaccttcca 21971981  T
Q  297 aggtcatggcttttgtttggaagactcttttagatcgaattccgacgcgtgtcaacttggaaaag 361  Q
    |||| ||  |||||||| ||||| |||||||||||||||| |||||  |||||||||||||||||    
T  21971982 aggtgatttcttttgttgggaaggctcttttagatcgaatcccgacatgtgtcaacttggaaaag 21972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28165158 - 28165095
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||| ||||| |||| ||||||||    
T  28165158 attttttataagggtatatttgtaaaaatattcaaaaaattacaataattgatgattgtattgg 28165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 52336904 - 52336841
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||||||||||||||||||| ||||| ||||  ||||||||||| |||||||||| | ||||||    
T  52336904 attttttatgagggtatattagtaaaaatatctaaaaagttacattaattaatgattatattgg 52336841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 31152550 - 31152591
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttaca 44  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  31152550 tttttatgagcgtatatttgtaaaaatattcaaaaagttaca 31152591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 45691632 - 45691591
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttaca 44  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  45691632 tttttatgagggtatatttgtaaaaatattcaaaaaattaca 45691591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 32153831 - 32153756
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatat-ttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||||| | |||| |||| ||||| ||||||||| ||||| |||||||||||| ||||||| |||||    
T  32153831 tactacctccgtccttaattataagaccttttta-aaaaaatatgttgtccctttttataagacccttttgttattt 32153756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 29437892 - 29437814
Alignment:
Q  108 gtactacctccgtcctttactataggacccttttagaaaaaata-tttgtctctttttataagatccttttgatattttc 186  Q
    ||||||||||||||| | | |||| ||| ||||| ||||||||| |||||| |||||||||||| || ||||||||||||    
T  29437892 gtactacctccgtccctaattataagactctttt-gaaaaaataatttgtccctttttataagacccctttgatattttc 29437814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42454905 - 42454854
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattca-aaaagttacactaatta 51  Q
    ||||||||||||||||||||| |||| ||||||| |||| ||||||||||||    
T  42454905 attttttatgagggtatatttataaaaatattcaaaaaaattacactaatta 42454854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 4280163 - 4280094
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaata-tttgtctctttttataagatccttttg 178  Q
    |||||||||||||| | | |||| ||||||||| ||||||||| |||||| ||||||||||||||| ||||    
T  4280163 tactacctccgtccctaattataagaccctttt-gaaaaaataatttgtccctttttataagatccatttg 4280094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 17483733 - 17483794
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataaga 170  Q
    |||||||||||||| | | |||| ||||||||| |||||||| ||||||||||||||||||||    
T  17483733 tactacctccgtccctaattataagaccctttt-gaaaaaataatttgtctctttttataaga 17483794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 50225457 - 50225378
Alignment:
Q  109 tactacctccgtcctttactataggaccctttta---gaaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    ||||||||| |||| ||| |||||||||||||||   ||||||| | ||||||||||||||||||  || |||||||||||    
T  50225457 tactacctcagtccctta-tataggacccttttaaaagaaaaaaaaattgtctctttttataagactctattgatattttc 50225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 9851843 - 9851798
Alignment:
Q  4 ttttatgagggtatatttgtaaacatattcaaaaagttacactaat 49  Q
    |||||| | |||||||||||||| ||||||||||||||||| ||||    
T  9851843 ttttataaaggtatatttgtaaaaatattcaaaaagttacattaat 9851798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 36674300 - 36674259
Alignment:
Q  144 aaaaaatatttgtctctttttataagatccttttgatatttt 185  Q
    |||||| ||||||| |||||||||||||||||||| ||||||    
T  36674300 aaaaaaaatttgtccctttttataagatccttttgctatttt 36674259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 4389608 - 4389684
Alignment:
Q  109 tactacctccgtcctttactataggaccctttta-gaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||  | | |||| |||| ||||| |||||| | |||||||||||||||||||||  ||||||||||    
T  4389608 tactacctccgtctctaattataagacctttttaagaaaaattttttgtctctttttataagatctctttgatattt 4389684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25130228 - 25130280
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaat 53  Q
    ||||| ||||| ||||||||||||||  |||||||||| ||||| ||||||||    
T  25130228 attttctatgatggtatatttgtaaaagtattcaaaaatttacaataattaat 25130280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 27479599 - 27479673
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaata-tttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||||| | ||||  |||||||| ||||||||| |||||| ||||||||||||||| |||| |||||    
T  27479599 tactacctccgtccttaattataataccctttt-gaaaaaataatttgtc-ctttttataagatccctttggtattt 27479673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 48921668 - 48921746
Alignment:
Q  108 gtactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48921668 gtactacctccgtcccttattataggacccttttagaaaaaatatttgtctctttttataagacccttttgatattttc 48921746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 16869615 - 16869537
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctct-ttttataagatccttttgatattttc 186  Q
    |||||||||||||| ||| |||||||||||||||||||| | |||||||||| |||||||||| |||||||||||||||    
T  16869615 tactacctccgtcccttattataggacccttttagaaaacaaatttgtctcttttttataagacccttttgatattttc 16869537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 1331043 - 1330967
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||||||  ||| |||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||    
T  1331043 tactacctccgtctattattataggacccttttagaaaaaa-aattgtccctttttataagacccttttgatattttc 1330967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17003608 - 17003556
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  17003608 tttttatgagggtatatttgtaaaaatattcaaaaagttacattaatcaatga 17003556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 28695674 - 28695724
Alignment:
Q  14 gtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  28695674 gtatatttgtaaaaatattcaaaaagttacactaattaatgattatattgg 28695724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 36659299 - 36659361
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattg 63  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||| ||||||| || |||||||    
T  36659299 attttttattagggtatacttgtaaaaatattcaaaaagttacattaattaacgattgtattg 36659361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40344965 - 40344902
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||| |||||||||||||||| |||||||||||||| || |||| ||||| || |||||    
T  40344965 attttttataagggtatatttgtaaaaatattcaaaaagttgcaataatcaatgactgcattgg 40344902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 10284691 - 10284611
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaa---aaatatttgtctctttttataagatccttttgatattttc 186  Q
    |||| ||||||||| ||| |||||||||||||||| ||   ||| | ||||| |||||||||||| |||||||||||||||    
T  10284691 tactccctccgtcccttattataggacccttttaggaagaaaaaaaattgtccctttttataagacccttttgatattttc 10284611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 42044290 - 42044220
Alignment:
Q  108 gtactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttg 178  Q
    ||||||||||||||| | | |||| || ||||||| |||||  |||||||||||||||||||||| |||||    
T  42044290 gtactacctccgtccctaattataagatccttttaaaaaaataatttgtctctttttataagatctttttg 42044220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 47860703 - 47860756
Alignment:
Q  2 ttttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    ||||||||||||||||||| ||||| ||||  ||||||||||| ||||||||||    
T  47860703 ttttttatgagggtatattagtaaaaatatctaaaaagttacattaattaatga 47860756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 15996811 - 15996735
Alignment:
Q  108 gtactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    ||||||||||||||| | | |||| |||||||||  |||||| ||||||| |||||||||||| || |||| |||||    
T  15996811 gtactacctccgtccctaattataagacccttttgaaaaaaaaatttgtccctttttataagacccctttgctattt 15996735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 30819878 - 30819953
Alignment:
Q  109 tactacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | |||||| ||||||||| |||||||| | ||||| |||||||||||| || ||||||||||    
T  30819878 tactacctccgtccctaactataagacccttttgagaaaaaa-aattgtccctttttataagacccctttgatattt 30819953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 38670829 - 38670789
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaa 149  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  38670829 tactacctccgtcccttattataggacccttttagaaaaaa 38670789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 42279267 - 42279227
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttac 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  42279267 tttttatgagggtatatttgtaaaaatattaaaaaagttac 42279227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 45261479 - 45261539
Alignment:
Q  4 ttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||| |||||||||||||||||| || |||||||||||||| |||| ||||| || |||||    
T  45261479 ttttttgagggtatatttgtaaaaatgttcaaaaagttacattaatcaatgaatgcattgg 45261539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 48904300 - 48904225
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | | |||| |||||||||| |||||  ||||||| ||||||||||||  |||||| |||||    
T  48904300 tactacctccgtccctaattataagacccttttaaaaaaataatttgtccctttttataagactcttttggtattt 48904225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 12918875 - 12918798
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaata-tttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||| ||| | | |||| |||||| || ||||||||| |||||| |||||||||||||||||||| |||||||    
T  12918875 tactacctccatccctaattataagaccctctt-gaaaaaataatttgtccctttttataagatccttttggtattttc 12918798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 15095198 - 15095275
Alignment:
Q  109 tactacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||||||| | | ||||  |||||||| |||||||| | ||||| ||||||||||||||| ||||||||||||    
T  15095198 tactacctccgtccctaattataaaacccttttgagaaaaaa-aattgtccctttttataagatccctttgatattttc 15095275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 29383057 - 29383091
Alignment:
Q  152 tttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||||||||||||||| ||||||||||||    
T  29383057 tttgtctctttttataagatccctttgatattttc 29383091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 35938408 - 35938442
Alignment:
Q  152 tttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||||||||||||| ||||||||||||||    
T  35938408 tttgtctctttttataagattcttttgatattttc 35938442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 16776925 - 16776849
Alignment:
Q  108 gtactacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    ||||||||||||||| | | ||||||| |||||| |||||||| ||| |||||||||||||||| || |||| |||||    
T  16776925 gtactacctccgtccctaattataggatccttttgagaaaaaaaatt-gtctctttttataagacccctttgctattt 16776849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43320170 - 43320129
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagtta 42  Q
    ||||||||| ||||| |||||||||| |||||||||||||||    
T  43320170 attttttataagggtgtatttgtaaaaatattcaaaaagtta 43320129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 10284004 - 10284044
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaa 149  Q
    |||| ||||||||| ||| ||||||||||||||||||||||    
T  10284004 tactccctccgtcccttattataggacccttttagaaaaaa 10284044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22923748 - 22923800
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    ||||||||| |||||||||||||| ||||  |||||||||||  |||||||||    
T  22923748 tttttatgaaggtatatttgtaaaaatatataaaaagttacaacaattaatga 22923800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 32211843 - 32211791
Alignment:
Q  12 gggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||| |||||||||| ||||  ||||| ||||||||||||||||||| |||||    
T  32211843 gggtgtatttgtaaaaatataaaaaaaattacactaattaatgagtgcattgg 32211791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 34811318 - 34811389
Alignment:
Q  112 tacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    ||||||||||| | | |||| || |||||| ||||||  ||||||| |||||||||||||||||||| |||||    
T  34811318 tacctccgtccctaattataagatcctttt-gaaaaataatttgtccctttttataagatccttttggtattt 34811389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 48922446 - 48922406
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaa 149  Q
    |||||||||||||| ||| |||||| |||||||||||||||    
T  48922446 tactacctccgtcccttattatagggcccttttagaaaaaa 48922406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 180455 - 180518
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  180455 attttttataagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 180518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34837183 - 34837121
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattg 63  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34837183 attttttatgagggtatatttgtaaaaatattcaaaaagttacactaattaatgagtgtattg 34837121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 180546 - 180646
Alignment:
Q  92 atattaagaaccggaggta---ctacctccgtcctttactat---aggacccttttagaaaaaatatttgtctctttttataagatccttttgatatttt 185  Q
    |||||||| ||||||||||   |||||||||||| ||| |||   | |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  180546 atattaaggaccggaggtagtactacctccgtcccttattattataagacccttttagaaaaaatatttgtctctttttataaaatctttttgatatttt 180645  T
Q  186 c 186  Q
    |    
T  180646 c 180646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 7926920 - 7926983
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||    
T  7926920 attttttatgagggtatatttgtaatcttattcaaaaagttatactaattaatgtgtgtattgg 7926983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 12143752 - 12143689
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| || |||||    
T  12143752 attttttatgagggtgtatttgtaaaaatattcaaaaagttacattaattaatgattgcattgg 12143689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 14459129 - 14459243
Alignment:
Q  243 cggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattccgac 342  Q
    |||||||| || ||||||||||||| |||||||||||| |  |||||||||| ||||| || ||||||||||||||| ||||    ||| | ||||||||    
T  14459129 cggaagggaagaggagggtgttccgccaaatttggaaatccagggcaccttccaaggtgattgcttttgtttggaaggctctccgggataggattccgac 14459228  T
Q  343 gcgtgtcaacttgga 357  Q
     ||| ||||||||||    
T  14459229 ccgtctcaacttgga 14459243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 4746169 - 4746088
Alignment:
Q  108 gtactacctccgtcctttactataggacccttttagaa---aaaatatttgtctctttttataagatccttttgatattttc 186  Q
    ||||| ||||||||| ||| ||||| | ||||||||||   |||| | ||||| ||||||||||||||||||||||||||||    
T  4746169 gtactccctccgtcccttattatagaatccttttagaagaaaaaaaaattgtccctttttataagatccttttgatattttc 4746088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 20794130 - 20794211
Alignment:
Q  267 gacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattccgacgcgtgt 348  Q
    ||||||||||||| || |||||||| || ||||| | ||| |||||||||||  ||||| | ||||| ||||||||||||||    
T  20794130 gacaaatttggaagaccggggcaccgtccaaggtgagggcctttgtttggaaagctcttcttgatcggattccgacgcgtgt 20794211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 2950185 - 2950133
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    ||||||| ||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  2950185 tttttatcaggatatatttgtaaaaatattcaaaaaattacattaattaatga 2950133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1856865 - 1856919
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    ||||| |||||| ||||||||||||| ||||| ||||| ||||| ||||||||||    
T  1856865 attttgtatgagagtatatttgtaaaaatatttaaaaaattacattaattaatga 1856919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 31116446 - 31116476
Alignment:
Q  11 agggtatatttgtaaacatattcaaaaagtt 41  Q
    |||||||||||||||||||||||||||||||    
T  31116446 agggtatatttgtaaacatattcaaaaagtt 31116476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6454398 - 6454334
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattca-aaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||| | ||||||||| |||| ||||||| |||| ||||||||||||||||  |||||||    
T  6454398 attttttataaaggtatatttctaaaaatattcaaaaaaattacactaattaatgacggtattgg 6454334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 11161851 - 11161926
Alignment:
Q  109 tactacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||||| | |||| || |||||| |||||||| |||||||  ||||||||||| ||||||| |||||    
T  11161851 tactacctccgtccttaattataagagccttttgagaaaaaa-atttgtccttttttataagacccttttggtattt 11161926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 31117373 - 31117401
Alignment:
Q  13 ggtatatttgtaaacatattcaaaaagtt 41  Q
    |||||||||||||||||||||||||||||    
T  31117373 ggtatatttgtaaacatattcaaaaagtt 31117401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 31707383 - 31707322
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31707383 tttttatgagggtatatttgtaaaaatattcaaaaagttacactaattaatgagtgtattgg 31707322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 15496130 - 15496208
Alignment:
Q  108 gtactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    ||||| ||||||||| ||| |||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||    
T  15496130 gtactccctccgtcccttattataggacccttttagaaaaaaaaattgtccctttttataagacccttttgatattttc 15496208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 17781384 - 17781462
Alignment:
Q  109 tactacctccgtcctttactataggacccttttag-aaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||||||| ||| |||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||    
T  17781384 tactacctccgtcccttattataggacccttttagaaaaaaaaaattgtccctttttataagatccttttgatattttc 17781462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 52575621 - 52575696
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    |||| ||||||||| ||| |||||||||||||||||||||  | ||||| | |||||||||| |||||||||||||||    
T  52575621 tactccctccgtcccttattataggacccttttagaaaaa--aattgtccccttttataagacccttttgatattttc 52575696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 18872717 - 18872792
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | | |||| ||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||    
T  18872717 tactacctccgtccctaattataagaccctttt-gaaaaaataatttgtccctttttataagatccctttgatattt 18872792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 19839990 - 19839911
Alignment:
Q  109 tactacctccgtcctttactataggacccttttaga--aaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    ||||| |||||||| ||| |||||||||||||||||  ||||| | ||||  |||||||||||| |||||||||||||||    
T  19839990 tactatctccgtcccttattataggacccttttagaagaaaaaaaattgttcctttttataagacccttttgatattttc 19839911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 24177417 - 24177460
Alignment:
Q  106 aggtactacctccgtcctttactataggacccttttagaaaaaa 149  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  24177417 aggtactacctccgtcctttattataagacccttttagaaaaaa 24177460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 17261344 - 17261422
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaa-aaaatatttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||||||| ||| ||||  ||| |||||||| |||| | ||||||||||||||||||  ||||||||||||||    
T  17261344 tactacctccgtcccttattataaaaccattttagaagaaaaaaattgtctctttttataagactcttttgatattttc 17261422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44720615 - 44720553
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattg 63  Q
    ||||||||||||| ||||||| |||| |||||||||| |||||| |||| ||||| |||||||    
T  44720615 attttttatgaggatatatttataaaaatattcaaaatgttacattaatcaatgattgtattg 44720553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 24178095 - 24178019
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    ||||| || ||||| ||| ||||| ||||||||||||||||  | |||| |||||||||||| |||||||||||||||    
T  24178095 tactatcttcgtcccttattatagaacccttttagaaaaaaattgtgtccctttttataaga-ccttttgatattttc 24178019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 47231603 - 47231552
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    ||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||    
T  47231603 tttttatgagg-tataattgtaaaaatattcaaaaagttacattaattaatga 47231552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 7698506 - 7698435
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaata-tttgtctctttttataagatccttttga 179  Q
    |||||||||||||| | | |||| |||||||||  |||||||| |||||| |||||||||||| ||||||||    
T  7698506 tactacctccgtccctaattataagacccttttgaaaaaaataatttgtccctttttataagacccttttga 7698435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18838866 - 18838921
Alignment:
Q  1 attttttatgagggtatatttgtaaacat-attcaaaaagttacactaattaatga 55  Q
    |||||||||||||||||||||||||| || ||||||||| ||| | ||||||||||    
T  18838866 attttttatgagggtatatttgtaaaaataattcaaaaatttatattaattaatga 18838921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42312434 - 42312399
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaa 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  42312434 attttttatgagggtatatttgtaaaaatattcaaa 42312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 39797434 - 39797509
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | | |||| || |||||| |||||||| ||||||| |||||||||||| ||||||| |||||    
T  39797434 tactacctccgtccctaattataaga-cctttttgaaaaaatcatttgtccctttttataagacccttttggtattt 39797509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8251351 - 8251414
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  8251351 attttttatgagggtatatttgtaaaaatattcaaaaaactacactaattaatgagtgtattgg 8251414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 2207887 - 2207944
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgta 60  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  2207887 tttttatgagggtatatttgtaaaaatattcaaaaagttacactaaataatgagtgta 2207944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2520166 - 2520103
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  2520166 attttttatgaggatatatttgtaaaaatattcaaaaagttacattaattaatgaatgtattgg 2520103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 31658969 - 31659029
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattg 63  Q
    ||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  31658969 tttttatgaggatatatttgtaaaaatattcaaaaaattatactaattaatgagtgtattg 31659029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16890301 - 16890251
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaatta 51  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  16890301 attttttatgagggtatatttgtaaaaatattcaaaaagttacattaatta 16890251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2152436 - 2152490
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||    
T  2152436 attttttataagggtatatttataaaaatattcaaaaagttacactaactaatga 2152490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 18112012 - 18111937
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | | |||| ||||||||| ||||||| | ||||| |||||||||||| || |||| |||||    
T  18112012 tactacctccgtccctaattataagacccttttggaaaaaaaaattgtccctttttataagacccctttgctattt 18111937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 30653662 - 30653623
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagtta 42  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  30653662 tttttatgagggtatatttgtaaaattattcaaaaagtta 30653623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 13568942 - 13568880
Alignment:
Q  109 tactacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataaga 170  Q
    |||||||||||||||| | |||| ||||||||| ||| |||| ||||||| ||||||||||||    
T  13568942 tactacctccgtccttaattataagacccttttgagagaaaaaatttgtccctttttataaga 13568880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 43594446 - 43594385
Alignment:
Q  2 ttttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||  |||||||||| | ||||||    
T  43594446 ttttttatgagggtatattagtaaaaatatttaaaaagttac-ttaattaatgattatattgg 43594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 10637182 - 10637142
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaa 149  Q
    |||| ||||||||| ||| ||||||||||||||||||||||    
T  10637182 tactccctccgtcccttattataggacccttttagaaaaaa 10637142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 16998996 - 16999072
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctc-tttttataagatccttttgatattt 184  Q
    |||| ||||||||| | | |||| |||||||||  |||||| ||||||| | ||||||||||||||||||| |||||    
T  16998996 tactccctccgtccataattataagacccttttgaaaaaaaaatttgtcccctttttataagatccttttgttattt 16999072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 31619285 - 31619210
Alignment:
Q  109 tactacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | | |||| |||| |||| |||||||| |||||||||||||||||||| | ||||| |||||    
T  31619285 tactacctccgtccctaaatataagaccattttgagaaaaaa-atttgtctctttttataagacctttttggtattt 31619210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 41508215 - 41508278
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  41508215 attttttatgagggtatatttgtaaaaacattcaaaaagttacactaattaataagtgtattgg 41508278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12485391 - 12485454
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||||||||||||||||||||||||   ||| ||||||||||||||||||||||| || |||||    
T  12485391 attttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattgg 12485454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12506823 - 12506886
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||||||||||||||||||||||||   ||| ||||||||||||||||||||||| || |||||    
T  12506823 attttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattgg 12506886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20949187 - 20949241
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||    
T  20949187 attttttatgagggtatatttgtaaaaatatttaaaaagttacattaatcaatga 20949241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 45072550 - 45072488
Alignment:
Q  2 ttttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||| |||||||| |||| ||||||||||| ||| |||||||||| ||||||||||    
T  45072550 ttttttatgagagtatatttataaaaatattcaaaaaattatactaattaatcagtgtattgg 45072488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 39844725 - 39844798
Alignment:
Q  269 caaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattccgac 342  Q
    ||||||||||| || || || ||||||||||| ||||||||||||||||||  ||||||||| || ||||||||    
T  39844725 caaatttggaagaccggagctccttcaaaggtgatggcttttgtttggaaggttcttttagaccgtattccgac 39844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 24282038 - 24282108
Alignment:
Q  119 gtcctttactataggacccttttagaa---aaaatatttgtctctttttataagatccttttgatattttc 186  Q
    |||||||| ||||||||||||||||||   |||| | ||||| |||||||||||| |||||||||||||||    
T  24282038 gtcctttattataggacccttttagaagaaaaaaaaattgtccctttttataagacccttttgatattttc 24282108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7307556 - 7307610
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    |||||||||||| ||||||||||||| |||| ||||| ||||| |||||||||||    
T  7307556 attttttatgagagtatatttgtaaaaatatgcaaaaggttaccctaattaatga 7307610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 348
Target Start/End: Original strand, 22196758 - 22196866
Alignment:
Q  240 gtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattcc 339  Q
    ||||||| || ||| |||| |||||  ||||||||||||| || |||||| | || ||||| | || ||||||||||||| ||||| | ||| | |||||    
T  22196758 gtccggagggtgagaggagagtgtttagacaaatttggaagaccggggcatcgtctaaggtgagggattttgtttggaaggctcttcttgattggattcc 22196857  T
Q  340 gacgcgtgt 348  Q
    |||||||||    
T  22196858 gacgcgtgt 22196866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 22241063 - 22240955
Alignment:
Q  240 gtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattcc 339  Q
    ||||||| || ||| |||| |||||  ||||||||||||| || |||||| | || ||||| | || ||||||||||||| ||||| | ||| | |||||    
T  22241063 gtccggagggtgagaggagagtgtttagacaaatttggaagaccggggcatcgtctaaggtgagggattttgtttggaaggctcttcttgattggattcc 22240964  T
Q  340 gacgcgtgt 348  Q
    |||||||||    
T  22240963 gacgcgtgt 22240955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 1574719 - 1574780
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataaga 170  Q
    |||||||||||||| | | |||| |||||||||| |||||| || |||| ||||||||||||    
T  1574719 tactacctccgtccctaattataagacccttttaaaaaaaaaatgtgtccctttttataaga 1574780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 508601 - 508637
Alignment:
Q  17 tatttgtaaacatattcaaaaagttacactaattaat 53  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  508601 tatttgtaaaaatattcaaaaagttacaataattaat 508637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 27813496 - 27813577
Alignment:
Q  109 tactacctccgtcctttactataggaccctttt----agaaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||||||| | | |||| |||||||||    |||||||| | ||||| |||||||||||| || ||||||||||||    
T  27813496 tactacctccgtccctaattataagacccttttgaaaagaaaaaaaaattgtccctttttataagacccctttgatattttc 27813577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 32118201 - 32118126
Alignment:
Q  108 gtactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    ||||||||||||||| | | |||| ||||||||| ||||||| | ||||| |||||||||||| || |||| |||||    
T  32118201 gtactacctccgtccctaattataagaccctttt-gaaaaaaaaattgtccctttttataagacccctttgctattt 32118126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 34470187 - 34470235
Alignment:
Q  15 tatatttgtaaacatattcaaaaagttacactaattaatgagtgtattg 63  Q
    |||||||||||| ||||||||||||||  | |||||||||| |||||||    
T  34470187 tatatttgtaaaaatattcaaaaagtttaattaattaatgattgtattg 34470235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 35569689 - 35569614
Alignment:
Q  108 gtactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    ||||||||||||||||| | |||| ||||||||| ||||||| | |||||  ||||||||||| || |||| |||||    
T  35569689 gtactacctccgtccttaattataagaccctttt-gaaaaaaaaattgtccttttttataagacccctttgctattt 35569614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 209 - 373
Target Start/End: Original strand, 1160228 - 1160392
Alignment:
Q  209 ttggaaaggagggaggttttggaggttaatcgtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggctt 308  Q
    |||||| |||| ||||||||||| ||||  ||||||| ||||||| |||||||||| || ||||||||||| || ||||| ||||| ||||| |  ||||    
T  1160228 ttggaagggagagaggttttggaagttacccgtccggtaggggagaggagggtgtttcgccaaatttggaagaccggggctccttccaaggtgagtgctt 1160327  T
Q  309 ttgtttggaagactcttttagatcgaattccgacgcgtgtcaacttggaaaagcataattgttta 373  Q
    ||||||||||| ||||  | ||| |||| ||  ||||||| || |||||||| |  |||||||||    
T  1160328 ttgtttggaaggctctccttgattgaatcccttcgcgtgttaatttggaaaaacggaattgttta 1160392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6688904 - 6688967
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||||||||||||||||||||||||   ||| ||||||||||||||||||||||| || |||||    
T  6688904 attttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattgg 6688967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 18705116 - 18705166
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaat 53  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  18705116 tttttataaggatatatttgtaaaaatattcaaaaagttacactaattaat 18705166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 2225697 - 2225756
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtatt 62  Q
    ||||||||| |||||||||||||| |||||  ||||||||||||||||||| | ||||||    
T  2225697 tttttatgaaggtatatttgtaaaaatatttcaaaagttacactaattaataattgtatt 2225756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 39971014 - 39971091
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||||||| | | |||| ||| ||||| |||||||| ||||||| ||||||||||||||| ||||||||||||    
T  39971014 tactacctccgtccctaattataagactctttt-gaaaaaataatttgtccctttttataagatccctttgatattttc 39971091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 9977980 - 9978060
Alignment:
Q  108 gtactacctccgtcctttactataggacccttttaga--aaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    ||||| ||||||||| ||| |||||||||||||||||  ||||| | || ||  ||||||||||| |||||||||||||||    
T  9977980 gtactccctccgtcccttattataggacccttttagaagaaaaaaaattatccttttttataagacccttttgatattttc 9978060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 20142296 - 20142221
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | | |||| ||||||||| ||||||| | ||||| |||||||||||| || |||| |||||    
T  20142296 tactacctccgtccctaattataagacccttttggaaaaaaaaattgtccctttttataagacccctttgctattt 20142221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 20186501 - 20186569
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatcctttt 177  Q
    |||||| ||||||| | | |||| |||||||||  |||||| ||||||| |||||||||||| ||||||    
T  20186501 tactacatccgtccctaattataagacccttttgaaaaaaaaatttgtccctttttataagaccctttt 20186569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 34258712 - 34258672
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaa 149  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  34258712 tactacctccgtcccttattataggacccttttaaaaaaaa 34258672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 154456 - 154518
Alignment:
Q  2 ttttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||    
T  154456 ttttttatgagggcatgtttgtaaaaatattcaacaagttacactaattaatgagtgtattgg 154518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 38496590 - 38496642
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  38496590 tttttatcagggtatatttgtaaaaatattcaaaaagttacactaattaatga 38496642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 3268915 - 3268965
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaat 53  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  3268915 tttttataagggtatatttgtaaaaatattcaaaaagttatactaattaat 3268965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 3269474 - 3269524
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaat 53  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  3269474 tttttataagggtatatttgtaaaaatattcaaaaagttatactaattaat 3269524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 3270033 - 3270083
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaat 53  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  3270033 tttttataagggtatatttgtaaaaatattcaaaaagttatactaattaat 3270083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 9701070 - 9701145
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||||| | |||| ||||||||| |||||||| ||||||| |||||||||||| ||||||| |||||    
T  9701070 tactacctccgtccttaattataagaccctttt-gaaaaaataatttgtccctttttataagacccttttggtattt 9701145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 40503992 - 40504044
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    ||||||||||||||||| |||||| ||||||||||  ||||||||||||||||    
T  40503992 tttttatgagggtatatctgtaaaaatattcaaaagattacactaattaatga 40504044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 21794953 - 21794992
Alignment:
Q  2 ttttttatgagggtatatttgtaaacatattcaaaaagtt 41  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  21794953 ttttttatgagggtatatttgtaaaaatattcaaaaagtt 21794992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38214228 - 38214291
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||||| |||||||||||| |||||||||||||| |  |||| ||||| ||||||||    
T  38214228 attttttatgaggatatatttgtaaaaatattcaaaaagtttctttaatcaatgattgtattgg 38214291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39063627 - 39063564
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||||| |||||||||||| |||||||||||||| |  |||| ||||| ||||||||    
T  39063627 attttttatgaggttatatttgtaaaaatattcaaaaagtttctttaatcaatgattgtattgg 39063564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40664350 - 40664413
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||||||| ||||||||||||||||  |||||||||||||| |  |||||||||| ||||||||    
T  40664350 attttttacgagggtatatttgtaagaatattcaaaaagtttctttaattaatgattgtattgg 40664413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 21229611 - 21229661
Alignment:
Q  14 gtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    ||||||||||||| ||||||||||||||||| |||||||||| || |||||    
T  21229611 gtatatttgtaaaaatattcaaaaagttacaataattaatgattgcattgg 21229661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2761626 - 2761682
Alignment:
Q  1 attttttatgagggtatat--ttgtaaacatattcaaaaagttacactaattaatga 55  Q
    ||||||||||||| |||||  || |||| ||||||||||||||||||||||||||||    
T  2761626 attttttatgaggatatatatttataaaaatattcaaaaagttacactaattaatga 2761682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 7116336 - 7116261
Alignment:
Q  109 tactacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | | |||| ||||||||| |||||||| ||| ||| |||||||||||||||||||| |||||    
T  7116336 tactacctccgtccctaattataagacccttttgagaaaaaaaatt-gtccctttttataagatccttttgctattt 7116261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 12890245 - 12890170
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | | |||| |||||||||  |||||| ||||||| |||||||||||| || |||| |||||    
T  12890245 tactacctccgtccctaattataagacccttttgaaaaaaaaatttgtccctttttataagacccctttgctattt 12890170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32872456 - 32872499
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttaca 44  Q
    |||||||||||||||||||||||||| | ||||||||| |||||    
T  32872456 attttttatgagggtatatttgtaaaaacattcaaaaaattaca 32872499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16781376 - 16781430
Alignment:
Q  1 attttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatga 55  Q
    |||||| ||||||||||||||||| |  |||||||||| ||| ||||||||||||    
T  16781376 atttttaatgagggtatatttgtataattattcaaaaaattagactaattaatga 16781430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 2060315 - 2060376
Alignment:
Q  108 gtactacctccgtcctttactataggaccctttt-agaaaaaatatttgtctctttttataa 168  Q
    ||||||||||||||| | | |||| ||||||||| |||||||| ||||||| ||||||||||    
T  2060315 gtactacctccgtccctaattataagacccttttgagaaaaaaaatttgtccctttttataa 2060376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 7016090 - 7016158
Alignment:
Q  117 ccgtcctttactataggacccttttagaaaaaatatttgtctctttttataagatccttttgatattttc 186  Q
    |||||||||| ||||| ||| |||||| ||||| | | |||||||||||||||||| |||| ||||||||    
T  7016090 ccgtcctttattatagaacctttttagtaaaaaaaat-gtctctttttataagatcattttaatattttc 7016158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 3095299 - 3095374
Alignment:
Q  109 tactacctccgtcctttactataggacccttttagaaaaaat-atttgtctctttttataagatccttttgatattt 184  Q
    |||||||||||||| | | |||| ||||||||| |||||||| ||||||| |||||||||||| |  ||||||||||    
T  3095299 tactacctccgtccctaattataagaccctttt-gaaaaaataatttgtccctttttataagacctctttgatattt 3095374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 51390 - 51451
Alignment:
Q  3 tttttatgagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattgg 64  Q
    |||||||||||||||| ||||||| |||||||||| |||||| |||||||||| ||||||||    
T  51390 tttttatgagggtataattgtaaaaatattcaaaatgttacattaattaatgattgtattgg 51451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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