View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_high_6 (Length: 398)
Name: NF9573_high_6
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 46909494 - 46909865
Alignment:
| Q |
14 |
agaagtaaaataatactaactgataggctaaacaactaacttaactctcattagagtaacaacagataagtaaaaactaaacatgactaggtaacaaata |
113 |
Q |
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| T |
46909494 |
agaagtaaaataatactaactgataggctaaacaactaacttaactctcattagagtaacaacagataagtaaaaactaaacatgactaggtaacaaata |
46909593 |
T |
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| Q |
114 |
aaatcaatccttaaatctgcaacactttcatatagaataaccatagacaggctacaccataaagccagctgcagaggatccgaatttgaggatggataga |
213 |
Q |
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| T |
46909594 |
aaatcaatccttaaatctgcaacactttcatatagaataaccatagacaggctacaccataaagccagctgcagaggatccgaatttgaggatggataga |
46909693 |
T |
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| Q |
214 |
tgatggagagaaagagaggaattgagagatatatgtattggaaagtatttgggtccattcacatggagctgcnnnnnnncacatgagcgctccaattata |
313 |
Q |
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| T |
46909694 |
tgatggagggaaagagaggaattgagagatatatgtattggaaagtatttgagtccattcacatggagctgcttttttttacatgagtgctccaattata |
46909793 |
T |
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| Q |
314 |
atgccaagattttggagagaaatagaaaaaatgaaaactaaaatctcccaggtacctttgctgttgtttctg |
385 |
Q |
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| T |
46909794 |
atgccaagattttggagagaaatagaaaaaatgaaaactaaaatctcccaggtacctttgctgttgtttctg |
46909865 |
T |
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