View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_1 (Length: 656)
Name: NF9573_low_1
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 200 - 643
Target Start/End: Complemental strand, 33453851 - 33453408
Alignment:
| Q |
200 |
aattataaagtaaaaacaagggtctaatacttattttctggttgtaattgacacagattttggctatggatattaacaaagaaaattacgaattgggtct |
299 |
Q |
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| T |
33453851 |
aattataaagtaaaaacaagggtctaatacttaatttctggttgtaattgtcacagattttggctatggatattaacaaagaaaattacgaattgggtct |
33453752 |
T |
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| Q |
300 |
gccagtaattaaaaaagctggtgttgatcacaaaattgatttcagagaaggtccagctcttccagttcttgatgagatgatcaaagacgtaagctttacc |
399 |
Q |
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| T |
33453751 |
accagtaattaaaaaagctggtgttgatcacaaaattgatttcagagaaggtccagctcttccagttcttgatgagatgatcaaagacgtaagctttacc |
33453652 |
T |
|
| Q |
400 |
atctttttctatgatgtcccacttgaagagaaaaagatacatttatgagaataatcaatgaacaatgacaaatttgattttttgtgtgtgatattaaatt |
499 |
Q |
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| T |
33453651 |
atctttttctatgatgtcccacttgaagagaaaaagatacatttatgagaataatcaatgaacaatgactaatttgattttttgtgtgcgatattaattt |
33453552 |
T |
|
| Q |
500 |
ttttaggaaaagaatcatggtagctacgatttcatttttgtggatgctgacaaagacaattacctcaactaccataagaggttaattgatcttgttaaag |
599 |
Q |
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| T |
33453551 |
ttttaggaaaagaatcatggtagctacgatttcatttttgtggatgctgacaaagacaattacctcaactaccataagaggttaattgatcttgttaaag |
33453452 |
T |
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| Q |
600 |
tgggaggtgtgatcggctacgacaacaccttatggaatggatct |
643 |
Q |
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| T |
33453451 |
tgggaggtgtgatcggctacgacaacaccttatggaatggatct |
33453408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 33454033 - 33453928
Alignment:
| Q |
18 |
catgctccttaaacttatcaatgctaagaacaccatggaaattggtgtctacactggctactccctccttgccactgccctagccattcctgaagatgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33454033 |
catgctccttaaacttatcaatgctaagaacaccatggaaattggtgtctacactggctactccctccttgccactgccctagccattcctgaagatgga |
33453934 |
T |
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| Q |
118 |
aaggta |
123 |
Q |
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|||||| |
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| T |
33453933 |
aaggta |
33453928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 39055880 - 39055952
Alignment:
| Q |
534 |
tttttgtggatgctgacaaagacaattacctcaactaccataagaggttaattgatcttgttaaagtgggagg |
606 |
Q |
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| T |
39055880 |
tttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgttaaagttggagg |
39055952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 39049271 - 39049317
Alignment:
| Q |
34 |
atcaatgctaagaacaccatggaaattggtgtctacactggctactc |
80 |
Q |
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| T |
39049271 |
atcaatgcaaagaacacgttggaaattggtgtctacactggctactc |
39049317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 39054766 - 39054812
Alignment:
| Q |
34 |
atcaatgctaagaacaccatggaaattggtgtctacactggctactc |
80 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
39054766 |
atcaatgcaaagaacacaatggaaattggtgtctacactggttactc |
39054812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 39292065 - 39292002
Alignment:
| Q |
17 |
acatgctccttaaacttatcaatgctaagaacaccatggaaattggtgtctacactggctactc |
80 |
Q |
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| T |
39292065 |
acatgctaattaagctcatcaatgcaaagaacacaatggaaattggtgtctacacaggttactc |
39292002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 39236727 - 39236799
Alignment:
| Q |
26 |
ttaaacttatcaatgctaagaacaccatggaaattggtgtctacactggctactccctccttgccactgccct |
98 |
Q |
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|||| ||||||||||| |||||||| | ||||||||||| |||||||| ||||| || || |||||||||| |
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| T |
39236727 |
ttaagcttatcaatgcaaagaacacgttagaaattggtgtgtacactggttactctctgctctccactgccct |
39236799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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