View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9573_low_11 (Length: 470)
Name: NF9573_low_11
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Complemental strand, 3614127 - 3613687
Alignment:
| Q |
15 |
acctgtgcaagccagtatgtttgtgctaatccaaatggatgtgcaacaatcctacaaagtgcttctttttgattaagaatctcattatgcattctctttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3614127 |
acctgtgcaagccagtatgtttgtgctaatccaaatggatgtgcaacaatcctacaaagtgcttctttttgattaagaatctcattatgcattctctttg |
3614028 |
T |
|
| Q |
115 |
ttgtaatagaatccaaggtattaagccatgaagtacaaatacggttcatattcagatcattataacagaatgtgcgatccttattgaggtgaagtagccc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3614027 |
ttgtaatagaatccaaggtattaagccatgaagtacaaatacggttcatattcagatcattataacagaatgtgcgatccttattgaggtgaagtagccc |
3613928 |
T |
|
| Q |
215 |
aaacagaccgataacattcaagcaaatcacgttcatcagttttccagaacatgtctctttcttccaagctaaacaagccctaacattctcttgatttgca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3613927 |
aaacagaccgataacattcaagcaaatcacgttcatcggttttccagaacatgtctctttctcccaagctaaacaagccctaacattctcttgatttgca |
3613828 |
T |
|
| Q |
315 |
aacgaatccgtccagtaatattctttcaaggttcttgaagttggatgaggcataataccagaacctaccacataggctcttgtccatgctgccaattttg |
414 |
Q |
| |
|
|| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3613827 |
aaagaatccgtccaacaatactctttcaaggttcttgaagttggatgaggcataataccagaacctaccccataggctcttgtccatgctgccaattttg |
3613728 |
T |
|
| Q |
415 |
agcgggcgcatggaacaagattcagcgcagcaagttgttgc |
455 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3613727 |
agcgggcgcatggaacaagattcagcacagcaagttgttgc |
3613687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 15 - 455
Target Start/End: Complemental strand, 14757950 - 14757510
Alignment:
| Q |
15 |
acctgtgcaagccagtatgtttgtgctaatccaaatggatgtgcaacaatcctacaaagtgcttctttttgattaagaatctcattatgcattctctttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||| |||||| |
|
|
| T |
14757950 |
acctgtgcaagccagtatgtttgtgctagtccaaatggatgtgcagcaattctacaaagtgcttctttctgtttaagaatctcattctgcattgtctttg |
14757851 |
T |
|
| Q |
115 |
ttgtaatagaatccaaggtattaagccatgaagtacaaatacggttcatattcagatcattataacagaatgtgcgatccttattgaggtgaagtagccc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||| |||||||||| |||||||||||||||||| |||||| |
|
|
| T |
14757850 |
ttgtaatagaatccaaggtattaagccatgaagtacaaatacgattcataatcggatcgttattacagaatgtgtgatccttattgaggtgaaatagccc |
14757751 |
T |
|
| Q |
215 |
aaacagaccgataacattcaagcaaatcacgttcatcagttttccagaacatgtctctttcttccaagctaaacaagccctaacattctcttgatttgca |
314 |
Q |
| |
|
||||||||| |||| |||||||||||||| |||| || | ||||| ||||| |||| |||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
14757750 |
aaacagaccaataatattcaagcaaatcatgttcgtcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgca |
14757651 |
T |
|
| Q |
315 |
aacgaatccgtccagtaatattctttcaaggttcttgaagttggatgaggcataataccagaacctaccacataggctcttgtccatgctgccaattttg |
414 |
Q |
| |
|
|| ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
14757650 |
aaagaatcagtccagcaatactctttcatcattcttgaagttggatgaggcataataccacaacctaccccataagctcttgtccatgctgccaattttg |
14757551 |
T |
|
| Q |
415 |
agcgggcgcatggaacaagattcagcgcagcaagttgttgc |
455 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14757550 |
agccggcgcatggaacaagattcaacgcagcaagttgttgc |
14757510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University