View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_17 (Length: 385)
Name: NF9573_low_17
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 49004761 - 49004406
Alignment:
| Q |
18 |
tcaaaaactaacaatatttaa-gtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgc |
116 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49004761 |
tcaaaaactaacaatatttaaagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgc |
49004662 |
T |
|
| Q |
117 |
atagctccttaaacattgttttccctgattccaagagctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatctagagtat |
216 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49004661 |
atagctccttaagcattgttttccctgattccaaaagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctagcttat |
49004562 |
T |
|
| Q |
217 |
gatttcaagtttcaaacagcgtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccat |
316 |
Q |
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|
||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49004561 |
gatttcaagcttcaaacagtgtgtaagtgtaacattatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaatattcagctccat |
49004462 |
T |
|
| Q |
317 |
ttcttcagacccaacttggttagtctcaaatccttcctcctgtacaagtacaatct |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004461 |
ttcttcagacccaacttggttagtctcaaatccttcctcctgtacaagtacaatct |
49004406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 38160784 - 38160429
Alignment:
| Q |
18 |
tcaaaaactaacaatatttaa-gtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgc |
116 |
Q |
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|
|||||||||||||||||| || |||||||||||||| | | |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
38160784 |
tcaaaaactaacaatattaaaagtgaaagatagtttcagctttgaatgttcaatggtaacttcataactcgcataatcagtttctcttcaaattcattgc |
38160685 |
T |
|
| Q |
117 |
atagctccttaaacattgttttccctgattccaagagctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatctagagtat |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38160684 |
atagctccttaagcattgttttccctgattccaagagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctacagtat |
38160585 |
T |
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| Q |
217 |
gatttcaagtttcaaacagcgtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccat |
316 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
38160584 |
gatttcaagcttcaaacagtgtgtaggtgtaactttatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaacattgagttccat |
38160485 |
T |
|
| Q |
317 |
ttcttcagacccaacttggttagtctcaaatccttcctcctgtacaagtacaatct |
372 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38160484 |
ttcctcagacccaatttggttagtctcaaatccttcctcctgtacaagcacaatct |
38160429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 38116958 - 38116767
Alignment:
| Q |
18 |
tcaaaaactaacaatatttaagtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116958 |
tcaaaaactaacaatatttaagtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgca |
38116859 |
T |
|
| Q |
118 |
tagctccttaaacattgttttccctgattccaagagctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116858 |
tagctccttaaacattgttttccctgattccaagagctcagatacctacatgaaatccacaattaaacatttcaaagatttaacattcatct |
38116767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 237 - 372
Target Start/End: Complemental strand, 38116760 - 38116625
Alignment:
| Q |
237 |
gtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116760 |
gtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
38116661 |
T |
|
| Q |
337 |
tagtctcaaatccttcctcctgtacaagtacaatct |
372 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38116660 |
tagtctcaaatccttcctcctgtacaagtacaatct |
38116625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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