View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_18 (Length: 380)
Name: NF9573_low_18
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 50763134 - 50762804
Alignment:
| Q |
18 |
agataataaccaatcactggctagagggtaatgatttgcgttacaggtttaaaaagctatttgacttagcgaatgacaagtttctgacagtggctgggat |
117 |
Q |
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| T |
50763134 |
agataataaccaatcactgactagagggtaatgatttgcgttacaggtttaaaaagctatttgacttagcgaatgacaagtt-------------gggat |
50763048 |
T |
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| Q |
118 |
gtgtactttaaggtgagtgggatgtaggagaagatgggtggaagtagctaagatgtgtacttttaaggttgaggagtgtagt---ctcttgttgtttaac |
214 |
Q |
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| T |
50763047 |
gtgtactttaaggtgagtgggatgtaggagaagatgggtggaagtagctaagatgtgtacttt-aaggttgaggagtgtagtagtctcttgttgtttaac |
50762949 |
T |
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| Q |
215 |
nnnnnnnatatattggtgtgcatgacaaatggaaatggaagttatattcggacaaaggatactcaattagtggtgtttatcatttgttggtcatggaaat |
314 |
Q |
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| T |
50762948 |
tttttttacatattggtgtgcat-acaaatggaaatggaagttatattcggacaaaggatactcaatcagtggtgtttatcatttgttggtcatggaaat |
50762850 |
T |
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| Q |
315 |
gtcaaaggatagctcaatcctctatgatattgtttggataaaagtg |
360 |
Q |
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| T |
50762849 |
gtcaaaggatagatcaatcctctatgatattgtttggataaaagtg |
50762804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 39280512 - 39280464
Alignment:
| Q |
311 |
aaatgtcaaaggatagctcaatcctctatgatattgtttggataaaagt |
359 |
Q |
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| T |
39280512 |
aaatgtcaagagatatatcactcctctatgatattgtttggataaaagt |
39280464 |
T |
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