View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9573_low_20 (Length: 336)
Name: NF9573_low_20
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 39944436 - 39944756
Alignment:
| Q |
18 |
atgatccaccacaaaatcaacaaccatcacaaaacattgaccctccacaaccaccacaatcttcaccaataaatgatcctcaagta---------caatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39944436 |
atgatccaccacaaaatcaacaaccatcacaaaacattgaccctccacaaccaccacaatcttcaccaataaatgatcctcaagtacaactagtacaatc |
39944535 |
T |
|
| Q |
109 |
accgattagtcatcctctacaactaacaattcattcaccacccaacagtccctcacaaccaccatctcacaatccctcaccaaccaatgagcctcaacat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39944536 |
accgattagtcatcctctacaactaacaaatcattcaccacccaacagtccctcacaaccaccatctcacaatccctcaccaaccaatgagcctcaacat |
39944635 |
T |
|
| Q |
209 |
ccacaatcaccatcaccacacaatgatcctacacaagaaattacacattcatccccagccctcactcctctacaccccccaccgccattctcaccaagtg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
39944636 |
ccacaatcaccatcaccacacaatgatcctacacaagaaattacacattcatcaccaggcctcaatcctctaccaccaccaccgccattctcaccaagtg |
39944735 |
T |
|
| Q |
309 |
acgacccttcaccaacaccaa |
329 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39944736 |
acgacccttcaccaacaccaa |
39944756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University