View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9573_low_25 (Length: 333)

Name: NF9573_low_25
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9573_low_25
NF9573_low_25
[»] chr4 (1 HSPs)
chr4 (19-327)||(4271155-4271463)
[»] chr1 (1 HSPs)
chr1 (19-327)||(2807499-2807807)
[»] chr3 (1 HSPs)
chr3 (131-213)||(49124460-49124542)
[»] chr6 (2 HSPs)
chr6 (131-213)||(11683332-11683414)
chr6 (141-210)||(18988535-18988604)
[»] chr8 (1 HSPs)
chr8 (131-210)||(30341157-30341236)
[»] chr5 (1 HSPs)
chr5 (141-210)||(23916920-23916989)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 4271463 - 4271155
Alignment:
Q  19 cactgcagggtagcagtgctcatgcagatattttaaacctctgattgacattaatcaatagtttgttcagaaacatagacattagagcacataggaaagg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4271463 cactgcagggtagcagtgctcatgcagatattttaaacctctgattgacattaatcaatagtgtgttcagaaacatagacattagagcacataggaaagg 4271364  T
Q  119 aatggaaattgattaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttcacataa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271363 aatggaaattgattaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttcacataa 4271264  T
Q  219 tcaatttttggaaaatagtgattagtattattttatcattgacctcattaacttttgatacgagtcttctattatcaaataataacaataattgaatgta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4271263 tcaatttttggaaaatagtgattagtattattttatcattgacctcattaacttttgatacgagtcttctattatcagataataacaataattgaatgta 4271164  T
Q  319 accacgaaa 327  Q
    |||||||||    
T  4271163 accacgaaa 4271155  T

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Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 2807807 - 2807499
Alignment:
Q  19 cactgcagggtagcagtgctcatgcagatattttaaacctctgattgacattaatcaatagtttgttcagaaacatagacattagagcacataggaaagg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2807807 cactgcagggtagcagtgctcatgcagatattttaaacctctgattgacattaatcaatagtttgttcagaaacatagacattagagcacataggaaagg 2807708  T
Q  119 aatggaaattgattaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttcacataa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2807707 aatggaaattgattaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttcacataa 2807608  T
Q  219 tcaatttttggaaaatagtgattagtattattttatcattgacctcattaacttttgatacgagtcttctattatcaaataataacaataattgaatgta 318  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2807607 tcaatttttggaaaatagttattagtattattttatcattgacctcattaacttttgatacgagtcttctattatcagataataacaataattgaatgta 2807508  T
Q  319 accacgaaa 327  Q
    |||||||||    
T  2807507 accacgaaa 2807499  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 49124460 - 49124542
Alignment:
Q  131 ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttca 213  Q
    |||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  49124460 ttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctgagccatgagatggtccttca 49124542  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 11683332 - 11683414
Alignment:
Q  131 ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttca 213  Q
    |||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||  |||||||    
T  11683332 ttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctgagccatgagattttccttca 11683414  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 18988535 - 18988604
Alignment:
Q  141 tcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtcct 210  Q
    |||||| | ||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||    
T  18988535 tcaccttgttgtgtcaagagaaatcttaattctcatatgccaagtcaatcctgagccatgagatggtcct 18988604  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 30341236 - 30341157
Alignment:
Q  131 ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtcct 210  Q
    |||| |||| |||||| | ||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||    
T  30341236 ttaaggaagttcaccttgttgtgtcaagagaaatcttaattctcatatgccaagtcaatcctgagccatgagatggtcct 30341157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 23916989 - 23916920
Alignment:
Q  141 tcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtcct 210  Q
    |||||| | ||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||    
T  23916989 tcaccttgttgtgtcaagagaaatcttaattctcatatgccaagtcaatcctgagccatgagatggtcct 23916920  T

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