View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_26 (Length: 328)
Name: NF9573_low_26
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 180039 - 179739
Alignment:
| Q |
1 |
agaatatgctaaaatggtttaaaaaggataaggataagatttcaattcaatcaataattaatacgatttcttatctcaatgaacttggccataccaagtg |
100 |
Q |
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| T |
180039 |
agaatatgctaaactggtttaaaaaggataaggataagatttcaattcaatcaataactaatacgatttcttatctcaatgaaattggtcataccaagtg |
179940 |
T |
|
| Q |
101 |
tagtggttgagtttagtaaattttaatcaaggtcaaatcaattcaaagcaattgagcttcatacctatacctaacaggaacaataaatcatagtttactt |
200 |
Q |
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| T |
179939 |
cagtggtggagtttagtaaatttgaatcaaggtcaaa----------gcaattgagcttcatacctatacctaacaggaacaataaatcgtagtttactt |
179850 |
T |
|
| Q |
201 |
atttttatttttagaaggtactttaaaatttaatctaatcattttcaaaagtttgacatgttagacttgggggccgtttagattaacttaattttggata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
179849 |
atttttatttttagaaggtactttaaaatttaatctaatcattttcaaaagtttggcatgttagacttaggggccgtttagattaacttaattttggata |
179750 |
T |
|
| Q |
301 |
tatgatagaag |
311 |
Q |
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||||||||||| |
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| T |
179749 |
tatgatagaag |
179739 |
T |
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