View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9573_low_28 (Length: 327)

Name: NF9573_low_28
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9573_low_28
NF9573_low_28
[»] chr1 (1 HSPs)
chr1 (1-311)||(46736618-46736916)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 46736618 - 46736916
Alignment:
Q  1 atgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataatagtcatactcaatttttaatgagtattattatgtacatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  46736618 atgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataataatcatactcaatttttaatgagtataattatgtacatt 46736717  T
Q  101 aagtaagtcattgtcgtttatggaaatatcggagttgttgtctatggaaatatcggaggtatgttgcagccttcaactgtcatttgttggcttgcttgtc 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46736718 aagtaagtcattgtcgtctatggaaatatcggagttgttgtctatggaaatatcggaggtatgttgcagccttcaactgtcatttgttggcttgcttgtc 46736817  T
Q  201 aatttactagttgacttcatatatattctatattagatattgaaaaagatattgaactagtattgtgttgcttgctggtattgtgagtcattgatttatg 300  Q
    |||||||| |||||||||||||||||| ||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46736818 aatttactggttgacttcatatatattttatatt------------agatattgaactagtattgtgttgcttgctggtattgtgagtcattgatttatg 46736905  T

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