View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_29 (Length: 324)
Name: NF9573_low_29
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 38918674 - 38918982
Alignment:
| Q |
1 |
aacgtcgctgctgctcggagttttagaaggagttttcgacgacttaggagctggagatgaagatggagacttagcaccaaaaagttcagaaggtaacaaa |
100 |
Q |
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| T |
38918674 |
aacgtcgctgctgctcggagttttggaaggagttttcgacgacttaggagctggagatgaagatggagacttagcaccaaaaagttcagaaggtaacaaa |
38918773 |
T |
|
| Q |
101 |
accttgtccaattgataaacagccaaaggaaattgttgtctcaaagcattgttgataggtacagtaacaactccagttgaaacattgacttggttacctt |
200 |
Q |
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| T |
38918774 |
accttgtccaattgataaacagccaaaggaaattgttgtctcaatgcattgttgataggtacagtaacaactccagttgaaacattgacttggttacctt |
38918873 |
T |
|
| Q |
201 |
gtgaagtgaagtgaagaccccagttaccttctttaccagaagcttgtgttctaactgggttagaaactgttaagaaatcggaaagagagtagtattttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38918874 |
gtgaagtgaagtgaagaccccagttaccttctttaccagaagcttgtgttctaactgggttagaaactgttaagaaatcggaaagagagtagtattttgg |
38918973 |
T |
|
| Q |
301 |
tgtaacatg |
309 |
Q |
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||||||||| |
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| T |
38918974 |
tgtaacatg |
38918982 |
T |
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