View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9573_low_3 (Length: 648)

Name: NF9573_low_3
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9573_low_3
NF9573_low_3
[»] chr8 (11 HSPs)
chr8 (15-630)||(37201903-37202518)
chr8 (106-247)||(37183215-37183356)
chr8 (106-247)||(37194347-37194488)
chr8 (385-486)||(37211417-37211519)
chr8 (456-542)||(37217026-37217111)
chr8 (98-271)||(37180125-37180298)
chr8 (279-391)||(37172821-37172935)
chr8 (480-540)||(37183009-37183068)
chr8 (480-540)||(37194141-37194200)
chr8 (409-441)||(37183083-37183115)
chr8 (409-441)||(37194215-37194247)
[»] chr2 (2 HSPs)
chr2 (387-546)||(414740-414899)
chr2 (442-546)||(7527133-7527236)
[»] chr4 (2 HSPs)
chr4 (98-271)||(5365596-5365769)
chr4 (210-294)||(5365955-5366039)
[»] chr5 (1 HSPs)
chr5 (210-271)||(20450565-20450626)


Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 15 - 630
Target Start/End: Complemental strand, 37202518 - 37201903
Alignment:
Q  15 cagagagtaataggaagctcattgaagagtctgagaatgcattagaaaaatgtgaagcacaaaagaaaaaagtgtccgaaatgttggaagcaatatgtgc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37202518 cagagagtaataggaagctcattgaagagtctgagaatgcattggaaaaatgtgaagcacaaaagaaaaaagtgtccgaaatgttggaagcaatatgtgc 37202419  T
Q  115 tgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaatctaaagttaagtgcttt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37202418 tgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgccaaatctaaagttaagtgcttt 37202319  T
Q  215 ctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttttcttcatggtagtggttttaggactcacttaatgcattgtaac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37202318 ctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttttcttcatggtagtggttttaggactcgcttaatgcattgtaac 37202219  T
Q  315 tattttgatttgaagtcactgtttcctaactcatgcagcacttgaaaaattacgcattgaatttggttggaagtgtaagattatagacaagtatttatgc 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37202218 tattttgatttgaagtcactgtttcctaactcatgcagcacttgaaaaattacgcattgaatttggttggaagtgtaagattatagccaagtatttatgc 37202119  T
Q  415 atggtgatttgaatttccatatgaatggccttatagatttgtttatttgatgacctggttgatcattaaaaatgtttgcatgagatgagtgctatattta 514  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37202118 atagtgatttgaatttccatatgaatggccttatagatttgtttatttgatgacctggttgatcattaaaaatgtttgcatgagatgagtgctatattta 37202019  T
Q  515 ttttaaaataaattaaccatcatgttataggaaatccattctttctctatggtgtgagggaaaatttaagtttcttcagaacactagtgaggttctagaa 614  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37202018 ttttaaaataaattaaccatcatgttataggaaacccattctttctctatggtgtgagggaaaattaaagtttcttcagaacactagtgaggttctagaa 37201919  T
Q  615 gtagctgtgttgttat 630  Q
    ||||||||||||||||    
T  37201918 gtagctgtgttgttat 37201903  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 37183356 - 37183215
Alignment:
Q  106 aatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaatctaaagtt 205  Q
    |||||||| | |||| |||||||||||| |||||||||| | ||||||||| |||||| || | ||||||| ||||||||||||||| |||||||||||     
T  37183356 aatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtc 37183257  T
Q  206 aagtgctttctgaaatgctcagtggttgatggtttgatttag 247  Q
    ||  |||||||||||||||||||||| ||||||||| |||||    
T  37183256 aaacgctttctgaaatgctcagtggtagatggtttgttttag 37183215  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 37194488 - 37194347
Alignment:
Q  106 aatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaatctaaagtt 205  Q
    |||||||| | |||| |||||||||||| |||||||||| | ||||||||| |||||| || | ||||||| ||||||||||||||| |||||||||||     
T  37194488 aatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtc 37194389  T
Q  206 aagtgctttctgaaatgctcagtggttgatggtttgatttag 247  Q
    ||  |||||||||||||||||||||| ||||||||| |||||    
T  37194388 aaacgctttctgaaatgctcagtggtagatggtttgttttag 37194347  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 385 - 486
Target Start/End: Complemental strand, 37211519 - 37211417
Alignment:
Q  385 aagtgtaagattatagacaagtatttatgcatggtgatttgaatttccatatgaatg-gccttatagatttgtttatttgatgacctggttgatcattaa 483  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||| ||||||||| |    
T  37211519 aagtgtaagattatggcgaagtatttatgcatggtgatttgaatttccatatgaatgtgccttatagatttgcttatttgttaacctgattgatcattta 37211420  T
Q  484 aaa 486  Q
    |||    
T  37211419 aaa 37211417  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 542
Target Start/End: Complemental strand, 37217111 - 37217026
Alignment:
Q  456 tttatttgatgacctggttgatcattaaaaatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgttat 542  Q
    |||||||| ||||||| ||||||| ||||||||| ||||||||||||||| ||||||| ||| |||| ||||| |||||||||||||    
T  37217111 tttatttggtgacctgattgatcactaaaaatgtctgcatgagatgagtggtatattt-tttaaaaacaaatttaccatcatgttat 37217026  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 37180298 - 37180125
Alignment:
Q  98 ttggaagcaatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaat 197  Q
    ||||||| |||||||| | |||| |||||||||||||| |||||| |   ||| ||| ||||||||||| | ||||||  ||||||| |||||   | ||    
T  37180298 ttggaagaaatatgtgttaaagagactgcttgcaaagaaagattgaccgcagcaaagaatgagtctacctcaatatctcaaacagttcggtattgcacat 37180199  T
Q  198 ctaaagttaagtgctttctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttt 271  Q
    ||||||| |   ||||||||||| |||||||| | |||||||| |||||| | ||||||||||| ||| |||||    
T  37180198 ctaaagtcagtcgctttctgaaacgctcagtgatggatggtttaatttagtgttgcaatttcatattcctgttt 37180125  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 391
Target Start/End: Complemental strand, 37172935 - 37172821
Alignment:
Q  279 ggtagtggttttaggactcacttaatgcattgta--actattttgatttgaagtcact-gtttcctaactcatgcagcacttgaaaaattacgcattgaa 375  Q
    |||||||||||||||| |  ||||||| ||| ||  ||||||||||||| ||| |||| |||||| ||||||||||| ||||| | ||| || |||||||    
T  37172935 ggtagtggttttaggatttgcttaatg-attttatgactattttgattttaagacacttgtttcccaactcatgcaggacttgcacaatgacacattgaa 37172837  T
Q  376 tttggttggaagtgta 391  Q
    |||||||||| |||||    
T  37172836 tttggttggaggtgta 37172821  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 540
Target Start/End: Complemental strand, 37183068 - 37183009
Alignment:
Q  480 ttaaaaatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgtt 540  Q
    ||||||||| ||||||||||| |||| |||||||| ||||||| |||||||| ||||||||    
T  37183068 ttaaaaatgcttgcatgagataagtggtatattta-tttaaaacaaattaacaatcatgtt 37183009  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 540
Target Start/End: Complemental strand, 37194200 - 37194141
Alignment:
Q  480 ttaaaaatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgtt 540  Q
    ||||||||| ||||||||||| |||| |||||||| ||||||| |||||||| ||||||||    
T  37194200 ttaaaaatgcttgcatgagataagtggtatattta-tttaaaacaaattaacaatcatgtt 37194141  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 441
Target Start/End: Complemental strand, 37183115 - 37183083
Alignment:
Q  409 ttatgcatggtgatttgaatttccatatgaatg 441  Q
    ||||||| |||||||||||||||||||||||||    
T  37183115 ttatgcacggtgatttgaatttccatatgaatg 37183083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 441
Target Start/End: Complemental strand, 37194247 - 37194215
Alignment:
Q  409 ttatgcatggtgatttgaatttccatatgaatg 441  Q
    ||||||| |||||||||||||||||||||||||    
T  37194247 ttatgcacggtgatttgaatttccatatgaatg 37194215  T

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Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 387 - 546
Target Start/End: Original strand, 414740 - 414899
Alignment:
Q  387 gtgtaagattatagacaagtatttatgcatggtgatttgaatttccatatgaatg-gccttatagatttgtttatttgatgacc-tggttgatcattaaa 484  Q
    |||||||||||||   |||||||||||||||||||||||||| | |||||||||| |||||||| ||||| |||  |||||  | || ||||||||||||    
T  414740 gtgtaagattataacaaagtatttatgcatggtgatttgaatcttcatatgaatgtgccttatacatttgcttaaatgatgggcatgattgatcattaaa 414839  T
Q  485 aatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgttatagga 546  Q
    |||||||||||||||||| || |||||||||||  ||| |||||||||||  ||||||||||    
T  414840 aatgtttgcatgagatgattggtatatttattt--aaacaaattaaccattgtgttatagga 414899  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 442 - 546
Target Start/End: Complemental strand, 7527236 - 7527133
Alignment:
Q  442 gccttatagatttgtttatttgatgacctggttgatcattaaaaatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgtta 541  Q
    |||||||| ||||| ||||||| ||||||| ||||||||||| |||||||||||||| || ||| |||||||| ||||||| ||||||||||| ||||||    
T  7527236 gccttataaatttgcttatttgctgacctgattgatcattaataatgtttgcatgaggtgtgtggtatattta-tttaaaacaaattaaccatgatgtta 7527138  T
Q  542 tagga 546  Q
    |||||    
T  7527137 tagga 7527133  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 5365596 - 5365769
Alignment:
Q  98 ttggaagcaatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaat 197  Q
    ||||||| |||||||| | |||| |||||||||||||| |||||| ||  ||| ||| |||| |||||| ||||||||  |||||   |||||   | ||    
T  5365596 ttggaagaaatatgtgttaaagagactgcttgcaaagaaagattgactgcagcaaagaatgaatctacctcgatatctcaaacagaccggtattacacat 5365695  T
Q  198 ctaaagttaagtgctttctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttt 271  Q
    ||||||  |   ||||| ||||| |||||||| | |||||||| |||||| | ||||||||||| ||| |||||    
T  5365696 ctaaagccagacgctttttgaaacgctcagtgatggatggtttaatttagtgttgcaatttcatattcctgttt 5365769  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 5366039 - 5365955
Alignment:
Q  210 gctttctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttttcttcatggtagtggttttagga 294  Q
    ||||||||||| |||||||| | |||||||| |||||| | |||| |||||| ||  |||||| |||||||| || |||||||||    
T  5366039 gctttctgaaacgctcagtgatggatggtttaatttagtgttgcagtttcatatttctgttttattcatggtggttgttttagga 5365955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 20450626 - 20450565
Alignment:
Q  210 gctttctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttt 271  Q
    ||||||||||| |||||||| | |||||||| |||||| | ||||||||||| ||| |||||    
T  20450626 gctttctgaaacgctcagtgatggatggtttaatttagtgttgcaatttcatattcttgttt 20450565  T

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