View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9573_low_32 (Length: 302)

Name: NF9573_low_32
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9573_low_32
NF9573_low_32
[»] chr3 (2 HSPs)
chr3 (1-204)||(51499403-51499606)
chr3 (252-285)||(51499604-51499637)
[»] chr1 (2 HSPs)
chr1 (153-234)||(14303896-14303977)
chr1 (153-227)||(15867626-15867700)
[»] chr4 (2 HSPs)
chr4 (155-188)||(18966018-18966051)
chr4 (153-217)||(51125842-51125906)
[»] chr8 (3 HSPs)
chr8 (159-219)||(26819248-26819308)
chr8 (153-227)||(30011780-30011854)
chr8 (153-183)||(39560361-39560391)
[»] scaffold0449 (1 HSPs)
scaffold0449 (154-211)||(10516-10573)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 51499403 - 51499606
Alignment:
Q  1 ttggtttgggtttgatcatctctggtgcaatccgcgtgcgtgatgagatgctcttggcagcctgtaagtacatgcaaccttgagagattatatcattaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499403 ttggtttgggtttgatcatctctggtgcaatccgcgtgcgtgatgagatgctcttggcagcctgtaagtacatgcaaccttgagagattatatcattaga 51499502  T
Q  101 acatgatgtccaattagagtttaattttgtatcaaggattttaaacgtcataatgattaaagtcaaacatttttaatgatatgacgatggtaattgatcg 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499503 acatgatgtcgaattagagtttaattttgtatcaaggattttaaacgtcataatgattaaagtcaaacatttttaatgatatgacgatggtaattgatcg 51499602  T
Q  201 atag 204  Q
    ||||    
T  51499603 atag 51499606  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 51499604 - 51499637
Alignment:
Q  252 tagccattgtgtgttgttaagacatggtttcgac 285  Q
    ||||| ||||||||||||||||||||||||||||    
T  51499604 tagccgttgtgtgttgttaagacatggtttcgac 51499637  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 14303977 - 14303896
Alignment:
Q  153 atgattaaagtcaaacatttttaatgatatgacgatggtaattgatcgatagtgtaaaaaatctttaaattgacaatatata 234  Q
    |||||||||||||||| ||| ||| ||| |||||||| | |||||| || ||||||||||||||||| ||||||||| ||||    
T  14303977 atgattaaagtcaaacttttataacgatctgacgatgctgattgattgacagtgtaaaaaatctttacattgacaatgtata 14303896  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 15867626 - 15867700
Alignment:
Q  153 atgattaaagtcaaacatttttaatgatatgacgatggtaattgatcgatagtgtaaaaaatctttaaattgaca 227  Q
    ||||||||||||||||| ||||||||||||||||||  | |||||| ||   ||||||||||||||| |||||||    
T  15867626 atgattaaagtcaaacagttttaatgatatgacgattatgattgattgacgttgtaaaaaatctttacattgaca 15867700  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 18966018 - 18966051
Alignment:
Q  155 gattaaagtcaaacatttttaatgatatgacgat 188  Q
    ||||||||||||||||||||||||||||||||||    
T  18966018 gattaaagtcaaacatttttaatgatatgacgat 18966051  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 51125906 - 51125842
Alignment:
Q  153 atgattaaagtcaaacatttttaatgatatgacgatggtaattgatcgatagtgtaaaaaatctt 217  Q
    ||||||||||||||| |||| ||||||| || ||||  | |||||| | ||||||||||||||||    
T  51125906 atgattaaagtcaaatatttctaatgatttggcgattatgattgattggtagtgtaaaaaatctt 51125842  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 26819308 - 26819248
Alignment:
Q  159 aaagtcaaacatttttaatgatatgacgatggtaattgatcgatagtgtaaaaaatcttta 219  Q
    |||||||||||||||||||||| | ||||| ||||||||| ||  ||||||| ||||||||    
T  26819308 aaagtcaaacatttttaatgatctaacgattgtaattgattgaatgtgtaaataatcttta 26819248  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 30011780 - 30011854
Alignment:
Q  153 atgattaaagtcaaacatttttaatgatatgacgatggtaattgatcgatagtgtaaaaaatctttaaattgaca 227  Q
    |||||| ||||||||||||||||||| |||||| |   | |||||| || |||||||||||| |||||| |||||    
T  30011780 atgattgaagtcaaacatttttaatgttatgacaagtatgattgattgacagtgtaaaaaatgtttaaactgaca 30011854  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 39560361 - 39560391
Alignment:
Q  153 atgattaaagtcaaacatttttaatgatatg 183  Q
    |||||||||||||||||||||||||||||||    
T  39560361 atgattaaagtcaaacatttttaatgatatg 39560391  T

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Target: scaffold0449 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 10573 - 10516
Alignment:
Q  154 tgattaaagtcaaacatttttaatgatatgacgatggtaattgatcgatagtgtaaaa 211  Q
    |||||||||||||||| |||| ||||| |||||||  |||||||| || |||||||||    
T  10573 tgattaaagtcaaacagtttttatgatgtgacgattataattgattgaaagtgtaaaa 10516  T

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