View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9573_low_36 (Length: 289)

Name: NF9573_low_36
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9573_low_36
NF9573_low_36
[»] chr1 (1 HSPs)
chr1 (15-278)||(35140237-35140500)
[»] chr3 (16 HSPs)
chr3 (15-278)||(6259097-6259353)
chr3 (15-278)||(6245188-6245441)
chr3 (15-278)||(13270431-13270687)
chr3 (15-256)||(6168811-6169045)
chr3 (15-250)||(6265617-6265845)
chr3 (15-249)||(6142213-6142440)
chr3 (15-248)||(6882432-6882658)
chr3 (146-239)||(6900025-6900118)
chr3 (39-249)||(8568871-8569075)
chr3 (13-133)||(6591229-6591348)
chr3 (146-237)||(5267970-5268061)
chr3 (164-221)||(5298661-5298718)
chr3 (197-237)||(6554516-6554556)
chr3 (197-237)||(6735901-6735941)
chr3 (149-221)||(7587802-7587874)
chr3 (39-99)||(8589772-8589832)
[»] chr4 (1 HSPs)
chr4 (146-218)||(25242184-25242256)
[»] chr7 (1 HSPs)
chr7 (146-225)||(6573322-6573401)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 35140237 - 35140500
Alignment:
Q  15 caattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35140237 caattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaa 35140336  T
Q  115 ctagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatat 214  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35140337 ctagtagaaaaatgtggggtgggggggttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatat 35140436  T
Q  215 tggagactgatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35140437 tggagactgatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 35140500  T

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Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 6259353 - 6259097
Alignment:
Q  15 caattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaa 114  Q
    ||||||||||||||||||||||  || ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||| || | ||||    
T  6259353 caattggaggagagtgactcttg-gaatttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgatcggcaagaaa 6259255  T
Q  115 ctagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatat 214  Q
     ||||||||||||||||||        ||  ||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  6259254 atagtagaaaaatgtgggg------ggttgccttcagctctgaaaacattggggattctcttgcaaagaaagttctctgaaaatgaatgggttaagatat 6259161  T
Q  215 tggagactgatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 278  Q
    |||||||||||||| ||||||||||||||||||||| |||||||| |||||||| | |||||||    
T  6259160 tggagactgatttgtggcgtttacccaagggtgacaacagcaacatttattccgctttgagaat 6259097  T

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Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 6245441 - 6245188
Alignment:
Q  15 caattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaa 114  Q
    ||||||||||||||||||||||  |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6245441 caattggaggagagtgactcttg-gagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattggtatgaaa 6245343  T
Q  115 ctagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatat 214  Q
     ||||||||||||||||||        |   ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  6245342 atagtagaaaaatgtgggg------ggtcgcctttagctctgaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggttaagatat 6245249  T
Q  215 tggagactgatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 278  Q
    | |||||||||||| ||||||||||  || ||||   |||||||| |||||||||||| |||||    
T  6245248 tagagactgatttgtggcgtttacctgagagtga---cagcaacatttattccgttctaagaat 6245188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 13270431 - 13270687
Alignment:
Q  15 caattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaa 114  Q
    ||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | || ||||||| |    
T  13270431 caattggaggagagtgactcttg-gagtttatttgtgagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatccatcggtatgaga 13270529  T
Q  115 ctagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatat 214  Q
     ||||||||||||||||||        ||  ||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  13270530 atagtagaaaaatgtgggg------gtttgcctttagctctgaaaacattggggattctcttgcaaagaaaattctctgaaattaaatgggttaagatat 13270623  T
Q  215 tggagactgatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaat 278  Q
    |||||||||||||| ||| |||  || | |||||||||| || || || |||| ||||||||||    
T  13270624 tggagactgatttgtggcatttctccgaaggtgacagcaacagcattttttccattctgagaat 13270687  T

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Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 6169045 - 6168811
Alignment:
Q  15 caattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaa 114  Q
    ||||||||||||||||||||||  |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6169045 caattggaggagagtgactcttg-gagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattggtatgaaa 6168947  T
Q  115 ctagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatat 214  Q
     ||||||||||||||||||        |   |||| ||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  6168946 atagtagaaaaatgtgggg------ggtcgccttttgctctaaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggttaagatat 6168853  T
Q  215 tggagactgatttgcggcgtttacccaagggtgacagcagca 256  Q
    | |||||||||||| || ||||||| ||| ||||||| ||||    
T  6168852 tagagactgatttgtggagtttacctaagagtgacagaagca 6168811  T

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Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 6265845 - 6265617
Alignment:
Q  15 caattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaa 114  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||  |||||| | ||||    
T  6265845 caattggaggagagtgactcttg-gagtttatttgtgagatatgcttttcaaggcaagaatgtgtttgaatatccaaatcttgaattgattggcaagaaa 6265747  T
Q  115 ctagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatat 214  Q
     |||||| |||||||||||        ||  ||||| ||||||||||| ||||||||||||| |||||||||||||| | || |||||||||| ||||||    
T  6265746 atagtagcaaaatgtgggg------ggttgcctttaactctgaaaacattggggattctcttccaaagaaaattctctgtaactgaatgggttgagatat 6265653  T
Q  215 tggagactgatttgcggcgtttacccaagggtgaca 250  Q
    |||||||||||||| || |||||||| |||||||||    
T  6265652 tggagactgatttgtggtgtttacccgagggtgaca 6265617  T

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Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 6142440 - 6142213
Alignment:
Q  15 caattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaa 114  Q
    ||||||||||||||| ||||||  |||||||||||||||||||| ||||  ||| |||||| |||||| ||||||||||||||||  ||| || | ||||    
T  6142440 caattggaggagagtaactcttg-gagtttatttgtgagatatgcttttccaggtaggaatgtgtttggatatccaaatcttgaattgataggcaagaaa 6142342  T
Q  115 ctagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatat 214  Q
     |||||||||| |||||||        ||  | ||||||||||||||| |||||||||||||| | ||||||||||| |||| ||||||||||| |||||    
T  6142341 atagtagaaaagtgtgggg------ggttgccattagctctgaaaacattggggattctcttgaatagaaaattctctgaaattgaatgggttaggatat 6142248  T
Q  215 tggagactgatttgcggcgtttacccaagggtgac 249  Q
    |||||||||||||| ||||||||||  ||||||||    
T  6142247 tggagactgatttgtggcgtttaccagagggtgac 6142213  T

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Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 6882658 - 6882432
Alignment:
Q  15 caattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaa 114  Q
    ||||||||||||||||| ||||  |||||||||||||||||||| |||| |||| |||||| | |||||||||||||||||||||  ||| || | ||||    
T  6882658 caattggaggagagtgattcttg-gagtttatttgtgagatatgcttttcaaggtaggaatgtatttgaatatccaaatcttgaattgataggcaagaaa 6882560  T
Q  115 ctagtagaaaaatgtggggtnnnnnnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatat 214  Q
     |||||||||| |||||||        ||  ||||||| ||||||||| |||||| |||||||| || ||||||||| |||  ||||||| ||||| |||    
T  6882559 atagtagaaaagtgtgggg------ggttgcctttagcactgaaaacattggggaatctcttgctaaaaaaattctctgaatctgaatggattaaggtat 6882466  T
Q  215 tggagactgatttgcggcgtttacccaagggtga 248  Q
    |||||||||||||| ||||||||||| |||||||    
T  6882465 tggagactgatttgtggcgtttacccgagggtga 6882432  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 6900118 - 6900025
Alignment:
Q  146 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacc 239  Q
    ||||||||||||||||| |||||| ||||||| ||||||| ||||| |||  ||| ||||||||||| ||||||||||||||  ||||||||||    
T  6900118 ctttagctctgaaaacattggggaatctcttggaaagaaagttctctgaacctgattgggttaagatgttggagactgatttctggcgtttacc 6900025  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 8568871 - 8569075
Alignment:
Q  39 gagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatgaaactagtagaaaaatgtggggtnnnn 138  Q
    |||||||||||||| | ||| |||| |||| | |||| ||||||||||||||||||||||| ||||||| | |||  | |||||||| ||||| |         
T  8568871 gagtttatttgtgaaacatgcttttcaaggaaagaatgtgtttgaatatccaaatcttgaatcgattggaaagaagattgtagaaaagtgtggag----- 8568965  T
Q  139 nnnttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttac 238  Q
       ||  |||||||| |||||||| |||||| |||||||||||||||||| ||  ||  |||||||  ||| ||||||||||||||| || ||| ||||     
T  8568966 -ggttgcctttagctgtgaaaacattggggaatctcttgcaaagaaaattttctcaaggtgaatggtctaacatattggagactgatatgtggcatttat 8569064  T
Q  239 ccaagggtgac 249  Q
    | |||||||||    
T  8569065 cgaagggtgac 8569075  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 6591229 - 6591348
Alignment:
Q  13 atcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattggtatga 112  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| ||||  ||| ||| || ||||||||||||||| ||||| |  ||| || | ||    
T  6591229 atcaattggaggagagtgactcttg-gagtttatttgtgagatatgcttttcgaggtagggatgtgtttgaatatccaactcttgtattgataggcaaga 6591327  T
Q  113 aactagtagaaaaatgtgggg 133  Q
    || |||||||||| |||||||    
T  6591328 aaatagtagaaaagtgtgggg 6591348  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 5268061 - 5267970
Alignment:
Q  146 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgttta 237  Q
    |||||||| | |||||  |||| | |||||||| ||||||||||||  || ||||||||||||||||||||||||| ||| || ||||||||    
T  5268061 ctttagctgtaaaaactttgggaaatctcttgcgaagaaaattctctcaacatgaatgggttaagatattggagacagatatgtggcgttta 5267970  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 5298718 - 5298661
Alignment:
Q  164 tggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagac 221  Q
    |||||| |||||||| ||||||||||||  ||  ||||||||||||||||||||||||    
T  5298718 tggggaatctcttgcgaagaaaattctctcaacgtgaatgggttaagatattggagac 5298661  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 6554516 - 6554556
Alignment:
Q  197 atgaatgggttaagatattggagactgatttgcggcgttta 237  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  6554516 atgaatggattaagatattggagactgatatgtggcgttta 6554556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 6735941 - 6735901
Alignment:
Q  197 atgaatgggttaagatattggagactgatttgcggcgttta 237  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  6735941 atgaatggattaagatattggagactgatatgtggcgttta 6735901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 7587874 - 7587802
Alignment:
Q  149 tagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagac 221  Q
    ||||| |||||||| ||||||  ||| ||||||||||||| ||  ||  ||||||| ||||||||||||||||    
T  7587874 tagctgtgaaaacattggggaaactcctgcaaagaaaattttctcaagctgaatggtttaagatattggagac 7587802  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 8589832 - 8589772
Alignment:
Q  39 gagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaa 99  Q
    |||||||||||||| | ||| |||| |||| | |||| ||| |||||||||||||||||||    
T  8589832 gagtttatttgtgacacatgcttttcaaggaaagaatgtgtgtgaatatccaaatcttgaa 8589772  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 25242184 - 25242256
Alignment:
Q  146 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattgga 218  Q
    |||||||| | ||||||  ||||| |||||||| ||||||||||||  || ||||||||||||||||||||||    
T  25242184 ctttagctgtaaaaacaacggggaatctcttgcgaagaaaattctctcaacatgaatgggttaagatattgga 25242256  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 6573322 - 6573401
Alignment:
Q  146 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgat 225  Q
    |||||||  |||||||| |||||| |||||||||||||||||| ||  |   ||||||| ||||||||||||| ||||||    
T  6573322 ctttagccgtgaaaacattggggaatctcttgcaaagaaaattttctcagggtgaatggtttaagatattggaaactgat 6573401  T

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