View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_39 (Length: 272)
Name: NF9573_low_39
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 40962368 - 40962564
Alignment:
| Q |
19 |
tctctacttagatgaaaattcaagtgagcttgagattttataatacatttcactggaatactccttcgggactgatatgatatgttattggctttcagtg |
118 |
Q |
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| T |
40962368 |
tctctacttagatgaaaattcaagtgagcttgagattttataatacatttcactggaatactccttcgggactgatatgatatgttatcggctttcagtg |
40962467 |
T |
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| Q |
119 |
tgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggagttatgctcaatcgcaataaggttctgagtttgat |
215 |
Q |
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| T |
40962468 |
tgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggtgttatgctcaatcgcaataaggttctgagtttgat |
40962564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 40962580 - 40962608
Alignment:
| Q |
226 |
ttattaattgaagcatctatgttcatgat |
254 |
Q |
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| T |
40962580 |
ttattaattgaagcatctatgttcatgat |
40962608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 22798227 - 22798317
Alignment:
| Q |
113 |
tcagtgtgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggagttatgctcaatcgcaataaggt |
203 |
Q |
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| T |
22798227 |
tcagtgtccatcttgtggagctatgtggaactgatcaacattttgccatgaaggctatggagaaggctgttatgctcaaccgtaataaggt |
22798317 |
T |
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