View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_41 (Length: 262)
Name: NF9573_low_41
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 15454728 - 15454862
Alignment:
| Q |
105 |
atggttgtttgttaaggtttttaatgtcaaattaaagccacctatgaaattaagaaagatgtatgtaccttgaaatcatccatttcagaaggtgaaactg |
204 |
Q |
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| T |
15454728 |
atggttgtttgttaaggtttttaatgtcaaattaaagccacctatgaaattaagaaagatgtatgtaccttgaaatcatccatttcagaaggtgaaactg |
15454827 |
T |
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| Q |
205 |
gtggactatctgttaaagatccattaagaggtcca |
239 |
Q |
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| T |
15454828 |
gtggactatctgttaaagatccattaagaggtcca |
15454862 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15454624 - 15454687
Alignment:
| Q |
1 |
aattggtactagtggtttctaactgtacactgtacagtgagatcagtgtttcgtgctttgtacc |
64 |
Q |
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| T |
15454624 |
aattggtactagtggtttctaactgtacactgtacagtgagatcagtgtttcgtgctttgtacc |
15454687 |
T |
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