View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_5 (Length: 634)
Name: NF9573_low_5
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 34976873 - 34977503
Alignment:
| Q |
1 |
atgttggacacgataaaacactgacaatgaaaataattgtaacacacatatcaatcacccagacatatcttcaatctaaagtgtttgtacgata------ |
94 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34976873 |
atgttggaaacgataaaacactgacaatgaaaataattgtaacacacatatcaatcacccagacatatcttcaatctaaagtgtctgtacgataacttaa |
34976972 |
T |
|
| Q |
95 |
-----------tacaaaaatcacatttgtgtaaataaaagatctattttaatatgatactatcattgtatagttcatttcctcctcatacacagcaacat |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976973 |
ccaatacaatatacaaaaatcacatttgtgtaaataaaagatctattttaatatgatactatcattgtatagttcatttcctcctcatacacagcaacat |
34977072 |
T |
|
| Q |
184 |
gattaaaaacattgaatattcatcattttatacctcgacaaaatttacaagaggaaaacagaaagttaaatattaccttgaccaagcttaaatttgaaag |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34977073 |
gattaaaaacattgaatattcatcattttatacctcgacaaaatttacaagaggaaaacagaaagttaaatattaccttgaccaagcttaaacttgaaag |
34977172 |
T |
|
| Q |
284 |
tggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaactacaaaaagacacaatcaaaatcaacattacattac |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977173 |
tggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaactacaaaaagacacaatcaaaatcaacattacattac |
34977272 |
T |
|
| Q |
384 |
taaccaattcagtttcataacagaaagatgtgaaatgtaatttaaatttgattgattattaattaattaccttcaacttgatctccattatcaggagttt |
483 |
Q |
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| T |
34977273 |
taaccaattcagtttcataagagaaagatgtgaaatgtaatttaaatttgattgatt----attaattaccttcaacttgatctccattatcaggagttt |
34977368 |
T |
|
| Q |
484 |
cccacccttcaccttccttaacaagcttcttcttcaaaccattcttcccaatctccttctcctcaccaactttctgagtcggactcatcacctcctcttc |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34977369 |
cccacccttcaccttccttaacaagcttcttcttcaaaccattcttcccaatctccttctcctcgccaactttctgagtcggactcatcacctcctcttc |
34977468 |
T |
|
| Q |
584 |
ctctggcatttccatgtttcctgctgttggaaact |
618 |
Q |
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| T |
34977469 |
ctctggcatttccatgtttcctgctgttggaaact |
34977503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 473 - 550
Target Start/End: Original strand, 3497496 - 3497573
Alignment:
| Q |
473 |
atcaggagtttcccacccttcaccttccttaacaagcttcttcttcaaaccattcttcccaatctccttctcctcacc |
550 |
Q |
| |
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||||||||| ||||| ||||||||||| || | |||||||||||||||||| | ||| || || ||||| |||||||| |
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| T |
3497496 |
atcaggagtatcccaaccttcaccttctttgagaagcttcttcttcaaaccttgctttccgatttccttttcctcacc |
3497573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 3497274 - 3497367
Alignment:
| Q |
258 |
accttgaccaagcttaaatttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaactaca |
351 |
Q |
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| T |
3497274 |
accttgtccaagcgtgaaattgaaagtagttcccctatctctgctagaatcaaacttcgtaccatcaagcaacgttccggtataatgaactaca |
3497367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 18850563 - 18850620
Alignment:
| Q |
292 |
ctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaacta |
349 |
Q |
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|||||||| || || |||||||| ||||||||||||||| ||||||| || ||||||| |
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| T |
18850563 |
ctatcacgacttgaatcaaatttagttccatcaagcaaagttccagtgtagtgaacta |
18850620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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