View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_56 (Length: 224)
Name: NF9573_low_56
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 32203583 - 32203775
Alignment:
| Q |
18 |
gaagaggtattcatgtaaatgttaataaggaaatagaaaagaaaggatttaagagccaaaccaagattttggctgtggtaaatgctcttaagtacaatgg |
117 |
Q |
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| T |
32203583 |
gaagaggtattcatgtaaatgtaaataaggaaatagaaaagaaaggatttaagagccaaaccaagattttggctgtggtaaatgctcttaagtacaatgg |
32203682 |
T |
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| Q |
118 |
tgttaaactcgtccgtgatgatgaagatgatggaaataatccctgacctcattcataagataggaatggaatcttgtgctaagtacatctctg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32203683 |
tgttaaactcgtccgtgatgatgaagatgatggaaataatccctgacctcattcataagataggaatggaatcttgtgctaagaacatctctg |
32203775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 35566410 - 35566218
Alignment:
| Q |
18 |
gaagaggtattcatgtaaatgttaataaggaaatagaaaagaaaggatttaagagccaaaccaagattttggctgtggtaaatgctcttaagtacaatgg |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35566410 |
gaagaggtattcatgtaaatgtaaataaggaaatagaaaagaaaggatttaagagccaaaccaagattttggctgtggtaaatgctcttaagtacaatgg |
35566311 |
T |
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| Q |
118 |
tgttaaactcgtccgtgatgatgaagatgatggaaataatccctgacctcattcataagataggaatggaatcttgtgctaagtacatctctg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35566310 |
tgttaaactcgtccgtgatgatgaagatgatggaaataatccctgacctcattcataagataggaatggaatcttgtgctaagaacatctctg |
35566218 |
T |
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