View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9573_low_8 (Length: 504)
Name: NF9573_low_8
Description: NF9573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9573_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 26886235 - 26885964
Alignment:
| Q |
19 |
agacaaagaaagctgctcttaaggtttcttcttctgttgttgctcttttatcttatactactggtattgtattctattcaactctcaaattccctttctc |
118 |
Q |
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| T |
26886235 |
agacaaagaaagctgctcttaaggtttcttcttctgttgttgctcttttatcttatactactggtattgtattctattcaactctccaattccttttctc |
26886136 |
T |
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| Q |
119 |
tctttcttttaatgatcttgctacattacaataatcattgttttttcttcctttataggggaccaagaattgaatcaatgttccggtgtgatcgttgaaa |
218 |
Q |
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| T |
26886135 |
tctttcttttaatgatcttgctacattacaataatcattgcttttt-ttcctttataggggaccaagaattgaatcaatgttccggtgtgatcgttgaaa |
26886037 |
T |
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| Q |
219 |
atgatgccgataatgctcatattgttttgacatccgccaatctcattcggcatcctcgtgaaaaagatctcct |
291 |
Q |
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| T |
26886036 |
atgatgccaataatgctcatattgttttgacatccgccaatctccttcggcgtcctcgtgaaaaaggtctcct |
26885964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 285 - 494
Target Start/End: Complemental strand, 26885997 - 26885788
Alignment:
| Q |
285 |
atctccttcaacgtcctcgtgaaaaaggtctcctggacgatactttggcagatagtcttaaggttggttcgtgtttatttataacttgatgattaggcag |
384 |
Q |
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| T |
26885997 |
atctccttcggcgtcctcgtgaaaaaggtctcctggacgatactttggcagatagtcttaaggttggttcgtgtttatttataaattgatgattaggcag |
26885898 |
T |
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| Q |
385 |
gcattgcatctgcattatagtcaagatgactatgatgttttattcttcttcgtaggttatcgtatacctgtatgacggtggatcatatgtgggagaagta |
484 |
Q |
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| T |
26885897 |
gcattgcatctgcatcatagtcaagatgactatgatgttttattcttcttcgtaggttatcgtatacctgtatgatggtggatcatatgtaggagaagta |
26885798 |
T |
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| Q |
485 |
tgtgcctatg |
494 |
Q |
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|||||||||| |
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| T |
26885797 |
tgtgcctatg |
26885788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 26631103 - 26631216
Alignment:
| Q |
21 |
acaaagaaagctgctcttaaggtttcttcttctgttgttgctcttttatcttatactactgg-----tattgtattctattcaactctcaaattcccttt |
115 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||||| |
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| T |
26631103 |
acaaagaaagctgctctcaaggcttcttcttctgttgttgctcttttatcttatactactggtattttattctattctattcaactttccaattcccttt |
26631202 |
T |
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| Q |
116 |
ctctctttctttta |
129 |
Q |
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| T |
26631203 |
ctctctttctttta |
26631216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 26631252 - 26631351
Alignment:
| Q |
175 |
aggggaccaagaattgaatcaatgttccggtgtgatcgttgaaaatgatgccgataatgctcatattgttttgacatccgccaatctcattcggcatcct |
274 |
Q |
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|||||||||||| || ||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26631252 |
aggggaccaagagtttaatcaatgttctggtgttatcattgaaaatgatgccaataatgctcatattgttttgacatccgccaatctcattcggcgtcct |
26631351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 494
Target Start/End: Original strand, 26631508 - 26631581
Alignment:
| Q |
421 |
gttttattcttcttcgtaggttatcgtatacctgtatgacggtggatcatatgtgggagaagtatgtgcctatg |
494 |
Q |
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|||||||||||||| |||||||| ||| ||||||||||||| ||||||| | |||| ||||| ||||||||| |
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| T |
26631508 |
gttttattcttctttgtaggttaagatattcctgtatgacggtcgatcatacgagggacaagtacgtgcctatg |
26631581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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