View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9575_low_1 (Length: 578)
Name: NF9575_low_1
Description: NF9575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9575_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 12 - 561
Target Start/End: Complemental strand, 3617510 - 3616961
Alignment:
| Q |
12 |
cagagaagaggaggagaaagaaagtgggtatatcaatttatgtacgttatatttatnnnnnnnnnnnngtgtgtgcgttgtcaaacaagccagctgctga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3617510 |
cagagaagaggaggagaaagaaagtgggtatatcaatttatgtacgttatatttatagagagagagaggtgtgtgcgttgtcaaacaagccagctgctga |
3617411 |
T |
|
| Q |
112 |
ttattattcctaaaatcctctaattcttttttctcttcttccctatttttaagataaaaaatagtggataagtgataaactattttacattggataaatt |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
3617410 |
ttattatccctaaaatcctctaattcttttttctcttcttccctatttttaagataaaaaatagtggacaagtgataaactattttacattggataagtt |
3617311 |
T |
|
| Q |
212 |
tatggcaaataagttttaagttattttgtaggtgatgatggataaactaattgattgaaattttattgtttgatcagattaacggttgagagtagtttat |
311 |
Q |
| |
|
||| | ||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3617310 |
tatagtgaatgaattttaagttattttgtaggtgatgacggataaactagttgattgaaattttattgtttgatcagattgacggttgagagtagtttat |
3617211 |
T |
|
| Q |
312 |
nnnnnnnnnnnnnnnnnnnnnnttgtattgaattaatatttacttttccaattaaaattgtaagagtaaaatcagaataaattatgataatttataaact |
411 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3617210 |
aaaaataaaatgacataaaaaattgtattaaattaatatttacttttccaattaaaattgtaagagtaaaatcaaaataaattatgataatttataaacc |
3617111 |
T |
|
| Q |
412 |
ggtttaattaacttatcaaaaaccttatataagttcacgaaaattagttattcttaagatcatgtaaaaacaaccgttaacgaaaatgtc-nnnnnnnaa |
510 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
3617110 |
ggtttaattaacttatc-aaaacctgatataagttcacgaaaattagttattcctaagatcgtgtaaaaacaaccgttaacgaaaatgtcttttttttaa |
3617012 |
T |
|
| Q |
511 |
ttatacggatttataagctataaatcttaagttcaaatttatgtcaaacgt |
561 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
3617011 |
ttatacggatttataagctataaatcataagtttaaatttatgtcaaacgt |
3616961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University