View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9575_low_8 (Length: 204)
Name: NF9575_low_8
Description: NF9575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9575_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 4590805 - 4590977
Alignment:
| Q |
19 |
ctagatcacttaaagagacgcatactgagaaagacacaaccaatggcagagaaacaacaaggacacaaaggacttttatttaagagtcagattagcccat |
118 |
Q |
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| T |
4590805 |
ctagatcacttaaagagacgcatactgagaaagacacaaccaatggcagagaaacaacaaggacgcacaagacttttttttaagagtcagattagcccgt |
4590904 |
T |
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| Q |
119 |
tgaaattgactctggagagaatcgagcatgatacattgagagaagtacactccacaatccgaagccaacacca |
191 |
Q |
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| T |
4590905 |
tgaaattgactctagagagaatcgagcatgatacattgagagaagcacactccacgatctgaagccaacacca |
4590977 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 4590401 - 4590503
Alignment:
| Q |
25 |
cacttaaagagacgcatactgagaaagacacaaccaatggcagagaaacaacaaggacacaaaggacttttatttaagagtcagattagcccattgaaat |
124 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||| | | || |||| ||||||||||||||||||||| |||||| |
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| T |
4590401 |
cacttaaagagacgaatactgagaaagacacaaccaatggtagagaaacta-----------atgattttt-tttaagagtcagattagcccaatgaaat |
4590488 |
T |
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| Q |
125 |
tgactctggagagaa |
139 |
Q |
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| T |
4590489 |
tggctctggagagaa |
4590503 |
T |
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