View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9575_low_9 (Length: 203)
Name: NF9575_low_9
Description: NF9575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9575_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 2187218 - 2187038
Alignment:
| Q |
8 |
agaagcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgtt |
107 |
Q |
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| T |
2187218 |
agaagcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgtt |
2187119 |
T |
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| Q |
108 |
gctgagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
188 |
Q |
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| T |
2187118 |
gctgagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
2187038 |
T |
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Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 36616421 - 36616601
Alignment:
| Q |
8 |
agaagcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgtt |
107 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36616421 |
agaagcagagaagttgacattgaaaatggatgtcaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgtt |
36616520 |
T |
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| Q |
108 |
gctgagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
188 |
Q |
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| T |
36616521 |
gctgagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
36616601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 36650175 - 36650355
Alignment:
| Q |
8 |
agaagcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36650175 |
agaagcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgtt |
36650274 |
T |
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| Q |
108 |
gctgagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
188 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36650275 |
gctgagagagttgcagagaagttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
36650355 |
T |
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