View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9576_high_4 (Length: 264)
Name: NF9576_high_4
Description: NF9576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9576_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 33575931 - 33576170
Alignment:
| Q |
16 |
caaccaaccaaacaagaccaattaagacagcagctctaacaagtaatcaatacataatccagttggtatgatgcaatttccaggagatttaaagaaagac |
115 |
Q |
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| T |
33575931 |
caaccaaccaaacaagaccaattaagacagcagctctaacaagtaatcaatacataatccagttggtatgatgcaatttccaggagatttaaagaaagac |
33576030 |
T |
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| Q |
116 |
taaatcatatcaaagggatcctgaggtttgaatgctcctgatttgtagttacaaaaatataaactggttttgtaggtctaataagcaatataatttaatt |
215 |
Q |
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| T |
33576031 |
taaatcatatcaaagggatcctgaggttttaatgctcctgatttgtagttacaaaaatataaactggttttgtaggtctaataagcaatataatttaatt |
33576130 |
T |
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| Q |
216 |
aggtaacaaatcacacatttatatgcataagcagtataat |
255 |
Q |
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| T |
33576131 |
aggtaacaaatcacacatttatatgcataagcaatataat |
33576170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 33576157 - 33576202
Alignment:
| Q |
196 |
ataagcaatataatttaattaggtaacaaatcacacatttatatgc |
241 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
33576157 |
ataagcaatataatttaatcatgtaacaaatcacacatttatatgc |
33576202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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