View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9576_low_14 (Length: 232)

Name: NF9576_low_14
Description: NF9576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9576_low_14
NF9576_low_14
[»] chr2 (4 HSPs)
chr2 (11-125)||(38252760-38252874)
chr2 (11-125)||(43156668-43156782)
chr2 (125-182)||(38252412-38252468)
chr2 (125-182)||(43157074-43157130)
[»] chr1 (6 HSPs)
chr1 (11-125)||(11473992-11474106)
chr1 (11-125)||(50019513-50019627)
chr1 (11-93)||(28245962-28246044)
chr1 (128-210)||(50019058-50019139)
chr1 (125-182)||(11474398-11474454)
chr1 (126-182)||(28245597-28245652)
[»] chr6 (3 HSPs)
chr6 (11-125)||(19307622-19307736)
chr6 (126-210)||(19307246-19307329)
chr6 (125-182)||(10123824-10123880)
[»] chr5 (2 HSPs)
chr5 (11-125)||(25382105-25382219)
chr5 (125-210)||(25382512-25382597)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 38252874 - 38252760
Alignment:
Q  11 aagcaaaggagttcagggtacgactcggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactcc 110  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38252874 aagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctcc 38252775  T
Q  111 acctaaagaaaaaag 125  Q
    |||||||||||||||    
T  38252774 acctaaagaaaaaag 38252760  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 43156668 - 43156782
Alignment:
Q  11 aagcaaaggagttcagggtacgactcggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactcc 110  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43156668 aagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctcc 43156767  T
Q  111 acctaaagaaaaaag 125  Q
    |||||||||||||||    
T  43156768 acctaaagaaaaaag 43156782  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 38252468 - 38252412
Alignment:
Q  125 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 182  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  38252468 gggggccaacctatttgaatggaatgaatgcatag-ggggcactggcgttgctgcatt 38252412  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 43157074 - 43157130
Alignment:
Q  125 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  43157074 gggggccaacctatttgaatggaatgaatgcata-gggggcactggcgttgctgcatt 43157130  T

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Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 11473992 - 11474106
Alignment:
Q  11 aagcaaaggagttcagggtacgactcggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactcc 110  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11473992 aagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctcc 11474091  T
Q  111 acctaaagaaaaaag 125  Q
    |||||||||||||||    
T  11474092 acctaaagaaaaaag 11474106  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 50019627 - 50019513
Alignment:
Q  11 aagcaaaggagttcagggtacgactcggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactcc 110  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||  || ||||    
T  50019627 aagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttttctggaaaaccagcaaagtcgcgctacatctagttgcgctcc 50019528  T
Q  111 acctaaagaaaaaag 125  Q
    || ||||||||||||    
T  50019527 acgtaaagaaaaaag 50019513  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 28246044 - 28245962
Alignment:
Q  11 aagcaaaggagttcagggtacgactcggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgct 93  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246044 aagcaaaggggttcagggtacaacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgct 28245962  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 50019139 - 50019058
Alignment:
Q  128 ggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcattcatgaaagtgcagtaactgtttttgctg 210  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||| ||  |||||| ||||||| ||||||||||||||    
T  50019139 ggccagcctatttgaatggaatgaatgcatag-ggggcacgggcgctgcggctgtcatgacagtgcagcaactgtttttgctg 50019058  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 11474398 - 11474454
Alignment:
Q  125 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  11474398 gggggccaacctatttgaatggaatgaatgcata-gggggcactggcgttgctgcatt 11474454  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 28245652 - 28245597
Alignment:
Q  126 ggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 182  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  28245652 ggggccaacctatttgaatggaatgaatgcatag-ggggcactggcgttgctgcatt 28245597  T

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Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 19307736 - 19307622
Alignment:
Q  11 aagcaaaggagttcagggtacgactcggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactcc 110  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  19307736 aagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtttggaaaaacagcatagtcgcgctacatctaggcgcgctcc 19307637  T
Q  111 acctaaagaaaaaag 125  Q
    |||||||||||||||    
T  19307636 acctaaagaaaaaag 19307622  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 19307329 - 19307246
Alignment:
Q  126 ggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcattcatgaaagtgcagtaactgtttttgctg 210  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||    
T  19307329 ggggccaacctatttgaatggaatgaattcataggggg-cactggcgttgctgcattcatgaaagtgcagcaactgtttttgctg 19307246  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 10123880 - 10123824
Alignment:
Q  125 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcatt 182  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  10123880 gggggccaacctatttgaatggaatgaatgcatag-ggggcactggcgttgctgcatt 10123824  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 25382105 - 25382219
Alignment:
Q  11 aagcaaaggagttcagggtacgactcggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactcc 110  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  25382105 aagcaaaggggttcaaggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctagccgcgctcc 25382204  T
Q  111 acctaaagaaaaaag 125  Q
    |||||||||||||||    
T  25382205 acctaaagaaaaaag 25382219  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 25382512 - 25382597
Alignment:
Q  125 gggggccaacctatttgaatggaatgaatgcataggggggcactggcgctgctgcattcatgaaagtgcagtaactgtttttgctg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| || || |||||||||||    
T  25382512 gggggccaacctatttgaatggaatgaatgcataggggggcactagcactgttgcattcatgaaagtgtagcaattgtttttgctg 25382597  T

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