View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9576_low_3 (Length: 419)
Name: NF9576_low_3
Description: NF9576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9576_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 216 - 398
Target Start/End: Original strand, 32217551 - 32217733
Alignment:
| Q |
216 |
ttcaaattattagcaccaaaaaccaaaaacttgtgcaagaagcatcacatattatatcataccttccctaaaatgggatactcagccttatatctgtcac |
315 |
Q |
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| T |
32217551 |
ttcaaattattagcaccaaaaaccaaaaacttgtgcaagaagcatcacatattatatcataccttccctaaaatgggatactcagccttatatctgtcac |
32217650 |
T |
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| Q |
316 |
aggcaaaatcttgtgcctcctgactagtccctggttctttccttaaaaattgattgcatggaaatcccaatatctcaagacct |
398 |
Q |
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| T |
32217651 |
aggcaaaatcttgtgcctcctgactagtccctggttctttccttaaaaattgattgcatggaaatcccaatatctcaagacct |
32217733 |
T |
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 40049557 - 40049474
Alignment:
| Q |
124 |
ggttaaataaaacctatgaagcacacaccatgatatgtacaacacaggcaccgacagatata-aactatact-aaattatgtga |
205 |
Q |
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| T |
40049557 |
ggttaaataaaacctatgaagcacacaccgtgatgtgtacaacataggcaccgacatatatataattatactaaaattatgtga |
40049474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 40049653 - 40049614
Alignment:
| Q |
14 |
tggacatcaagtataacaaacaattgataattggtcatat |
53 |
Q |
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| T |
40049653 |
tggacatcaagtataacaaacaattaataattggtgatat |
40049614 |
T |
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