View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9576_low_5 (Length: 349)
Name: NF9576_low_5
Description: NF9576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9576_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 40632021 - 40632336
Alignment:
| Q |
20 |
catgattacttgaatgtcctaattagaaatatcagaaatattatttataataaggaacttattattttaatgttgttcagaaggtacaaaagttgtccaa |
119 |
Q |
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| T |
40632021 |
catgattacttgaatgtcctaattagaaatatcagaaatattatttataataaggaacttattattttaatgttgttcagaaggtacaaaagttgttcaa |
40632120 |
T |
|
| Q |
120 |
ataacattattcttactaccatgcgaattagccttttgacctatcacatttattagaactgcttaggctataaatactaaaaactgaacaatgtaaattg |
219 |
Q |
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| T |
40632121 |
ataacattattcttactaccatgcgaattagccttttgacctatcacatttattagaactgcttaggctataaatactaaaaactgaacaatgtaaatta |
40632220 |
T |
|
| Q |
220 |
attagtgaagnnnnnnntcatttacgatgctaacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaatggaggnnnnnnncact |
319 |
Q |
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| T |
40632221 |
attagtgaagaaaaaaatcatttacgatgctaacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaatggaggaaaaaaacact |
40632320 |
T |
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| Q |
320 |
aggtcgatctaggtgg |
335 |
Q |
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| T |
40632321 |
aggtcgatctaggtgg |
40632336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 302
Target Start/End: Original strand, 33233531 - 33233739
Alignment:
| Q |
93 |
tgttcagaaggtacaaaagttgtccaaataacattattcttactaccatgcgaattagccttttgacctatcacatttattagaactgcttaggctataa |
192 |
Q |
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| T |
33233531 |
tgttcaaaagatacaaaagttgttcaaattacattattcttactactatgctaattagccttttgacctatcacatctatcaaaactgcttaggctctaa |
33233630 |
T |
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| Q |
193 |
atactaaaaactgaacaatgtaaattgattagtgaagnnnnnnntcatttacgatgctaacaaaatatcttattagatatatgaaaatagtggaagcaac |
292 |
Q |
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| T |
33233631 |
attctaaaaaccaaacaatgtaaattgattagaaaag-agtaaatcatttgggatgttaacataatatcttgttaaatatatgaaaatagtggaagcaac |
33233729 |
T |
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| Q |
293 |
ttaatgaaaa |
302 |
Q |
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|||||||||| |
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| T |
33233730 |
ttaatgaaaa |
33233739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 140 - 308
Target Start/End: Original strand, 42775589 - 42775754
Alignment:
| Q |
140 |
atgcgaattagccttttgacctatcacatttattagaactgcttaggctataaatactaaaaactgaacaatgtaaattgattagtgaagnnnnnnntca |
239 |
Q |
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| T |
42775589 |
atgctaattagccttttgtctcatcacatctattagaaccgcttaggctataa-tactgaaaactaaacagtgcaaattgattagagaagaaaacg--ca |
42775685 |
T |
|
| Q |
240 |
tttacgatgctaacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaatggagg |
308 |
Q |
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| T |
42775686 |
attagcatgttaacaaaatatcacattacatatatgaaaatagtagaagcaacttaattaaaatggagg |
42775754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 21444961 - 21445099
Alignment:
| Q |
53 |
agaaatattatttataataaggaacttattattttaatgttgttcagaaggtacaaaagttgtccaaataacattattcttactaccatgcgaattagcc |
152 |
Q |
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|||||||||||||| ||| |||||||| | ||||| ||||| |||||| ||| ||||||||| |||| |||||||| | || |||| ||| |||| |
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| T |
21444961 |
agaaatattatttaaaattaggaacttttcatttttgtgttggccagaagataccaaagttgtcaaaattacattatt----ccactatgctaataagcc |
21445056 |
T |
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| Q |
153 |
ttttgacctatcacatttattagaactgcttaggctataaata |
195 |
Q |
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| ||| || ||||||| |||||||| ||||||||||||||||| |
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| T |
21445057 |
tcttgtcccatcacatctattagaaatgcttaggctataaata |
21445099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 52738280 - 52738248
Alignment:
| Q |
175 |
gaactgcttaggctataaatactaaaaactgaa |
207 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52738280 |
gaactgcttaggctataaatactaaaaactgaa |
52738248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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