View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9576_low_6 (Length: 327)
Name: NF9576_low_6
Description: NF9576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9576_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 45241036 - 45240729
Alignment:
| Q |
6 |
tttggtggtgtgttgaattgata--gcaacaaggaagtttgctactgattttctgggcttttctgctatatgtatgctactgattttctggtttttctgc |
103 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241036 |
tttggtggtgtgttgaattgatatagcaacaaggaagtttgctactgattttctgggtttttctgctatatgtatgctactgattttctggtttttctgc |
45240937 |
T |
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| Q |
104 |
tacttgattgcagtgtcttcaattcatatttatgtagtgataaggcctgattaaatcctatcaacaatttgataagaattcagcgttgcactctataata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45240936 |
tacttgattgcagtgtcttcaattcatatttatgtagtgataaggcctgattaaatcctatcaacaatttgataagaattcagcgttgcactctataata |
45240837 |
T |
|
| Q |
204 |
atagtatggtggctagtgcattaggttcttattcttagattgctttcaccaaaggtagactggtgtacataaaaaagaaatgagtgttgctgaatgggga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45240836 |
atagtatggtggctagtgcattaggttcttattcttagattgctttcaccaaaggtaggctggtgtacataaaaaagaaatgagtgttgctgaatgggga |
45240737 |
T |
|
| Q |
304 |
gttatagg |
311 |
Q |
| |
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|||||||| |
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| T |
45240736 |
gttatagg |
45240729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 45218537 - 45218336
Alignment:
| Q |
6 |
tttggtggtgtgttgaattgatagcaacaaggaagtttgctactgattttctgggcttttctgctatatgtatgctactgattttctggtttttctgcta |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
45218537 |
tttggtggtgtgttgaattgatagcaacaaggaagtttgctactgattttctggttttttctgctatgtgtatgctactggttttctggtttttctgcta |
45218438 |
T |
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| Q |
106 |
cttgattgcagtgtcttcaattcatatttatgtagtgataaggcctgattaaatcctatcaacaatttgataagaattcagcgttgcactct-ataataa |
204 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
45218437 |
cttgattgtagtgtcttcaattcatatttatgtagtgataaggcctgataaaatcctatcaacaatttgataagaattcagtgttgcactctaataataa |
45218338 |
T |
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| Q |
205 |
ta |
206 |
Q |
| |
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|| |
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| T |
45218337 |
ta |
45218336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 45218067 - 45217984
Alignment:
| Q |
215 |
gctagtgcattaggttcttattcttagattgctttcaccaaaggtagactggtgtacataaaaaagaaatgagtgttgctgaat |
298 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45218067 |
gctagtacattaggttcttattcttagattgctttcaccaaaggtaggctggtgtacataaaaaagaaatgagtgttgctgaat |
45217984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 43913697 - 43913811
Alignment:
| Q |
21 |
aattgatagcaacaaggaagtttgctactgattttctgggcttt-----tctgctatatgtatgctactgattttctggtttttctgctacttgattgca |
115 |
Q |
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|||||||||||||| |||||||||| |||||||||||| ||| |||| | | |||||||| |||||||| |||||||| |||||||| ||||| |
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| T |
43913697 |
aattgatagcaacattgaagtttgctgctgattttctggtttttatttatctgttgtgtgtatgctgctgattttttggtttttaggctacttggttgca |
43913796 |
T |
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| Q |
116 |
gtgtcttcaattcat |
130 |
Q |
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||||||| ||||||| |
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| T |
43913797 |
gtgtctttaattcat |
43913811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 9289843 - 9289666
Alignment:
| Q |
78 |
tgctactgattttctggtttttctgctactt-gattgcagtgtcttcaattcatatttatgtagtgataaggcctgattaaatcctatcaacaatttgat |
176 |
Q |
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|
|||| ||||||||||||||||| |||||||| ||||||| | |||||||||||| ||| ||| | ||||| | ||||||||||||||||||||| |
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| T |
9289843 |
tgctgctgattttctggtttttttgctacttagattgcaatatcttcaattcatgttt-----gtgccagggccttacaaaatcctatcaacaatttgat |
9289749 |
T |
|
| Q |
177 |
aagaattcagcgttgcactcta-taataatagtatggtggctagtgcattaggttcttattcttagattgctttcaccaaaggt |
259 |
Q |
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||| | | || ||||||||||| ||||| || || ||| ||||||||||| ||||| ||||||||||||||| ||||||||||| |
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| T |
9289748 |
aaggagttagtgttgcactctaataatagtacta-ggtagctagtgcattgggttcatattcttagattgctatcaccaaaggt |
9289666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 9063421 - 9063485
Alignment:
| Q |
66 |
ctgctatatgtatgctactgattttctggtttttctgctacttgattgcagtgtcttcaattcat |
130 |
Q |
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| T |
9063421 |
ctgctatgtgtatgctactgattttttagtttttctgctacttgattgcagtgtcttcaattcat |
9063485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 8575697 - 8575817
Alignment:
| Q |
13 |
gtgtgttgaattgatagcaacaaggaagtttgctactgattttctggg-cttttctgctatatgtatgctactgattttctggtttttctgctac--ttg |
109 |
Q |
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||||||||||| |||| |||||||| ||||||||| ||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| |
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| T |
8575697 |
gtgtgttgaatcaatagttacaaggaaatttgctactaattttttggttcttttctgctacgtgtatgctgctgattttctggtttttctgctacttttg |
8575796 |
T |
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| Q |
110 |
attgcagtgtcttcaattcat |
130 |
Q |
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|||| ||| |||||||||||| |
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| T |
8575797 |
attgtagtatcttcaattcat |
8575817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 9070075 - 9070145
Alignment:
| Q |
61 |
cttttctgctatatgtatgctactgattttctggtttttctgctac-ttgattgcagtgtcttcaattcat |
130 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||||| ||| ||||||| ||| |||||||||||| |
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| T |
9070075 |
cttttctgctatgtgtatgctgttgattttctggtttttctattactttgattgtagtatcttcaattcat |
9070145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 9289930 - 9289881
Alignment:
| Q |
6 |
tttggtggtgtgttgaattgatagcaacaaggaagtttgctactgatttt |
55 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
9289930 |
tttgatggtgtgttgaatcaatagcaacaaggaagtttgctactaatttt |
9289881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 9063523 - 9063595
Alignment:
| Q |
134 |
tatgtagtgataaggcctgattaaatcctatcaacaatttgataagaattcagcgttgcactctataataatagt |
208 |
Q |
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|||||||||||||||| ||| ||||| |||||||||||||||| | |||| |||| |||||||||||||||| |
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| T |
9063523 |
tatgtagtgataaggctagataaaatcttatcaacaatttgata--gagtcagtgttgtactctataataatagt |
9063595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 9070179 - 9070221
Alignment:
| Q |
137 |
gtagtgataaggcctgattaaatcctatcaacaatttgataag |
179 |
Q |
| |
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|||||||||||| ||||| |||||| ||||||||||||||||| |
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| T |
9070179 |
gtagtgataaggactgataaaatccgatcaacaatttgataag |
9070221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 9314271 - 9314231
Alignment:
| Q |
134 |
tatgtagtgataaggcctgattaaatcctatcaacaatttg |
174 |
Q |
| |
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|||||||||||||| |||||| ||||||||| ||||||||| |
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| T |
9314271 |
tatgtagtgataagacctgataaaatcctattaacaatttg |
9314231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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