View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9576_low_8 (Length: 275)
Name: NF9576_low_8
Description: NF9576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9576_low_8 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 28102129 - 28101881
Alignment:
| Q |
13 |
gagaggtcgtcattcctcagtgttgcctctgcatctatctttcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatactactat |
112 |
Q |
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| T |
28102129 |
gagaggtcgtcattcctcagtgttgcctctgcatctatctttcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatactactat |
28102030 |
T |
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| Q |
113 |
gtatgctgatttgagtactgataagataccttttaccacaacacacaactctaagacaccaacagctgcagcagttaagagtgttcaaattttgaagcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102029 |
gtatgctgatttgagtactgataagataccttttaccacaacacacaactctaagacaccaacagctgcagcagttaagagtgttcaaattttgaagcaa |
28101930 |
T |
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| Q |
213 |
ttttggggagatgtggaggatggtgactctgacactgaagacctcactg |
261 |
Q |
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| T |
28101929 |
ttttggggagatgtggaggatggtgactctgacactgaagacctcactg |
28101881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 36905874 - 36906121
Alignment:
| Q |
13 |
gagaggtcgtcattcctcagtgttgcctctgcatctatct-ttcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatactacta |
111 |
Q |
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||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
36905874 |
gagaggtcgtcattccttagtgttgcctttgcatacatctcttcagcttgtgatccttgtttactgagaccacacctaatgcttgttccatatactacta |
36905973 |
T |
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| Q |
112 |
tgtatgctgatttgagtactgataagataccttttaccacaacacacaactctaagacaccaacagctgcagcagttaagagtgttcaaattttgaagca |
211 |
Q |
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| T |
36905974 |
tgtatgctgaattgagtactgataagagaccttttaccacaacatacaactctaagacaccaacagctgcagcacttaagagtgtccaaattttgaagca |
36906073 |
T |
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| Q |
212 |
attttggggagatgtggaggatggtgactctgacactgaagacctcac |
259 |
Q |
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| T |
36906074 |
attttggggagatgtggagggtgatgactctgacactgaagacctcac |
36906121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 3248791 - 3248645
Alignment:
| Q |
23 |
cattcctcagtgttgcctctgcatctatct-ttcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatactactatgtatgctga |
121 |
Q |
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| T |
3248791 |
cattcctcagtgttgcctctgcatccatctcttcagcttgcgatccttgtgaactgagaccacgcctaatgcctgttccatatactactatgtatgctga |
3248692 |
T |
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| Q |
122 |
tttgagtactgataagataccttttaccacaacacacaactctaaga |
168 |
Q |
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| T |
3248691 |
gttgagtactgacaagagaccttttaccacaacacacaactcaaaga |
3248645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 3248648 - 3248576
Alignment:
| Q |
189 |
aagagtgttcaaattttgaagcaattttggggagatgtggaggatggtgactctgacactgaagacctcactg |
261 |
Q |
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| T |
3248648 |
aagagtgtccaaattttgaagcaattttggggagatgtggaggatgatgactctgacactgaagacctcactg |
3248576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 74317 - 74222
Alignment:
| Q |
70 |
gtgaactgagaccacgcctaatgcatgttccatatactactatgtatgctgatttgagtactgataagataccttttaccacaacacacaactcta |
165 |
Q |
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| T |
74317 |
gtgaactgagaccaagcagaatgcatcttccatatactactatgtatggtgagttcagtactgataagatgccttttaccacaacacacaactcta |
74222 |
T |
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