View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9577_low_1 (Length: 517)
Name: NF9577_low_1
Description: NF9577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9577_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 1425449 - 1425940
Alignment:
| Q |
18 |
cctgagaaatatatcctatatatataataaatgcatccatctcaatcttcatttgagaaaccatgtaactgtatagaatagtctagtggaaagaatagac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1425449 |
cctgagaaatatatcctatatatataataaatgcatccatctcaatcttcattcgagaaaccatgtaactgtatagaatagtctagtggaaagaatagac |
1425548 |
T |
|
| Q |
118 |
catgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgttgcatgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1425549 |
catgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgttgcatgat |
1425648 |
T |
|
| Q |
218 |
atctagttatgtagtgtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatgtgtattatcatcattatgtaacttgatagaa |
317 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1425649 |
atctagttatgtaatgtgagataatgaattcaatgaataagtcttttgtaagtatgaatatcaccaatgtgtattatcatcattatgtaacttgatggaa |
1425748 |
T |
|
| Q |
318 |
gtattagaaggtttagatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1425749 |
gtattagaaggtttagatgtaggttaagatccaagtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctct |
1425848 |
T |
|
| Q |
418 |
aattctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccacca |
509 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
1425849 |
aattctattccgtctaatcttactatacatccaacacaacgtcctcatatctactatgcttaatttatgtttttgctggttgtttaccacca |
1425940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 40 - 509
Target Start/End: Original strand, 1447550 - 1448030
Alignment:
| Q |
40 |
tataataaatgcatccatctcaatcttcatttgagaaaccatgtaactgtatagaatagtctagtggaaagaata-gaccatgaacaagccaatgcttaa |
138 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| || | |||||| || ||||||||||||| |
|
|
| T |
1447550 |
tataataaatgcatacattccaaccttcatttgagaaaccatgtaactgtatacaatagtctagtggaaaaaaaaagaccatcgactagccaatgcttaa |
1447649 |
T |
|
| Q |
139 |
ggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgtt-------gca--tgatatctagttatgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||| |
|
|
| T |
1447650 |
ggtatttgaaaactctacaagcagtactacaatgaatatttgtgggtttggataagaattagctaagttgttaactgatgaaggtgatatctagttatgt |
1447749 |
T |
|
| Q |
230 |
agtgtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgatagaagtattagaag |
327 |
Q |
| |
|
| |||||||| | ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1447750 |
aatgtgagatactgaattcaatgaatgagtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatgtaacttgatagaagtattagaag |
1447849 |
T |
|
| Q |
328 |
gtttagatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctctaattctatcc |
427 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1447850 |
gtttagatgtaggttaagatccaagtaatcttcagtcaccaagtaaacctaagtagtattgtcccataaatttatgttca-gttagctctaattttatcc |
1447948 |
T |
|
| Q |
428 |
cgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccacca |
509 |
Q |
| |
|
| |||| |||||||| | ||| ||||||||||| ||||||||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
1447949 |
cctctagtcttactacacatccaacacaacttcttcatatctattatgcttaatttatgtttgtgttggttgtttaccacca |
1448030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 234 - 509
Target Start/End: Original strand, 1470229 - 1470506
Alignment:
| Q |
234 |
tgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgatagaagtattagaaggttt |
331 |
Q |
| |
|
|||||| || ||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||| | |
|
|
| T |
1470229 |
tgagataatgaattcaatgaaggggtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatataacttgatggaagtattataaggtct |
1470328 |
T |
|
| Q |
332 |
agatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctctaattctatcccgtc |
431 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
1470329 |
tgatttaggtttagatccaagtaatcttcagtcatcaagtaaacctaagtagtattgccccataaatttatgttcatgttaggtctaattctatcatgtc |
1470428 |
T |
|
| Q |
432 |
taatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccacca |
509 |
Q |
| |
|
|| ||||| | | | | |||||||||| || |||||||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
1470429 |
tagccttacaacatacccaacacaacttttgtatctctactatgcttaatttatgtttgtgttggttgcttaccacca |
1470506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University