View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9577_low_11 (Length: 254)
Name: NF9577_low_11
Description: NF9577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9577_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 13038045 - 13038166
Alignment:
| Q |
11 |
caaagggcgatgattataaaagcttaattagtcttcattaaaattttttgatgtcaggttcctaatgatattagaggtacctgacgtgggaataagcttg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13038045 |
caaagggcgatgattataaaagcttaattagtcttcattaaacaattttaatgtcaggttcctaatggaattagaggtacctgacgtgggaataagcttg |
13038144 |
T |
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| Q |
111 |
taaattatggtcactcttataa |
132 |
Q |
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||||||||||||||||| |||| |
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| T |
13038145 |
taaattatggtcactctgataa |
13038166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 13108053 - 13108174
Alignment:
| Q |
11 |
caaagggcgatgattataaaagcttaattagtcttcattaaaattttttgatgtcaggttcctaatgatattagaggtacctgacgtgggaataagcttg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13108053 |
caaagggcgatgattataaaagcttaattagtcttcattaaacaattttaatgtcaggttcctaatggaattagaggtacctgacgtgggaataagcttg |
13108152 |
T |
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| Q |
111 |
taaattatggtcactcttataa |
132 |
Q |
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||||||||||||||||| |||| |
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| T |
13108153 |
taaattatggtcactctgataa |
13108174 |
T |
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