View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9577_low_12 (Length: 239)

Name: NF9577_low_12
Description: NF9577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9577_low_12
NF9577_low_12
[»] chr6 (3 HSPs)
chr6 (1-146)||(7326151-7326296)
chr6 (169-212)||(6922703-6922746)
chr6 (162-224)||(7326393-7326450)
[»] chr4 (5 HSPs)
chr4 (148-212)||(35130658-35130723)
chr4 (162-212)||(13538317-13538367)
chr4 (170-211)||(49479453-49479494)
chr4 (148-212)||(17882291-17882355)
chr4 (149-212)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (169-213)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (148-212)||(30746010-30746074)
chr7 (162-212)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (169-213)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (169-209)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (148-214)||(32594558-32594625)
chr3 (169-212)||(52093594-52093637)
chr3 (169-212)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (179-213)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 7326151 - 7326296
Alignment:
Q  1 attgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcataatctaaaatgttgtttgctgcaaataagtgaaattagcttcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  7326151 attgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcctaatctaaaatgttgtttgctgcaaataagtgaagttagcttcat 7326250  T
Q  101 ttcataccgaaaaatcaagcacattgacaacgcaagctattagcac 146  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  7326251 ttcataccgaaaaatcaagcacattgacaacgcaagctattggcac 7326296  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 6922703 - 6922746
Alignment:
Q  169 caaattattcctgatagctaccaactgaactatacttacgggac 212  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  6922703 caaattattcatggtagctaccaactgaactacacttacgggac 6922746  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 7326393 - 7326450
Alignment:
Q  162 ccctactcaaattattcctgatagctaccaactgaactatacttacgggacacacttatttct 224  Q
    |||| |||||||||| |||| ||||||||||||||     |||||||||||||||||||||||    
T  7326393 ccctgctcaaattatccctggtagctaccaactga-----acttacgggacacacttatttct 7326450  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 35130658 - 35130723
Alignment:
Q  148 ggttcgaaccccggccc-tactcaaattattcctgatagctaccaactgaactatacttacgggac 212  Q
    ||||||||||||||||| | | ||||||||  ||| |||||||||||||||||| |||||||||||    
T  35130658 ggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacgggac 35130723  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 13538317 - 13538367
Alignment:
Q  162 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 212  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  13538317 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 13538367  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 49479494 - 49479453
Alignment:
Q  170 aaattattcctgatagctaccaactgaactatacttacggga 211  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  49479494 aaattatttctgatagctaccaactgaactacacttatggga 49479453  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 17882291 - 17882355
Alignment:
Q  148 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 212  Q
    ||||||||||| | |||| | |||||||| | ||| |||||| |||||||||| |||||||||||    
T  17882291 ggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactacacttacgggac 17882355  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 35010431 - 35010495
Alignment:
Q  149 gttcgaaccccggc-cctactcaaattattcctgatagctaccaactgaactatacttacgggac 212  Q
    |||||||||||| | ||| | ||||||||  |||||||||||||||||| ||| |||||||||||    
T  35010431 gttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgggac 35010495  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 35896 - 35852
Alignment:
Q  169 caaattattcctgatagctaccaactgaactatacttacgggaca 213  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  35896 caaattatctctgatagctaccaactgaactatacttacgagaca 35852  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 30746010 - 30746074
Alignment:
Q  148 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 212  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||||||  |||||||| |||||    
T  30746010 ggttcaaaccccgcccctgcacaaattattcctgatagttaccaactgagttatacttatgggac 30746074  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 9667293 - 9667343
Alignment:
Q  162 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 212  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  9667293 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 9667343  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 24793513 - 24793469
Alignment:
Q  169 caaattattcctgatagctaccaactgaactatacttacgggaca 213  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  24793513 caaattatctctgatagctaccaactgaactatacttacgagaca 24793469  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 29097928 - 29097888
Alignment:
Q  169 caaattattcctgatagctaccaactgaactatacttacgg 209  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29097928 caaattattcctgatagttaccaactgaactacacttacgg 29097888  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 32594625 - 32594558
Alignment:
Q  148 ggttcgaaccccggcc-ctactcaaattattcctgatagctaccaactgaactatacttacgggacac 214  Q
    ||||||||||||| || |||| ||||||||||||  || ||||||||||||||| |||||||| ||||    
T  32594625 ggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaacac 32594558  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 52093637 - 52093594
Alignment:
Q  169 caaattattcctgatagctaccaactgaactatacttacgggac 212  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093637 caaattatccctgatagctaccaactgagccatacttacgggac 52093594  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 52093792 - 52093749
Alignment:
Q  169 caaattattcctgatagctaccaactgaactatacttacgggac 212  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093792 caaattatccctgatagctaccaactgagccatacttacgggac 52093749  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 2276308 - 2276274
Alignment:
Q  179 ctgatagctaccaactgaactatacttacgggaca 213  Q
    |||||||||||||||||||||||||||||| ||||    
T  2276308 ctgatagctaccaactgaactatacttacgagaca 2276274  T

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