View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9577_low_3 (Length: 443)

Name: NF9577_low_3
Description: NF9577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9577_low_3
NF9577_low_3
[»] chr6 (9 HSPs)
chr6 (2-428)||(11669879-11670304)
chr6 (2-165)||(11628227-11628390)
chr6 (1-159)||(11622124-11622282)
chr6 (14-159)||(11706346-11706491)
chr6 (14-159)||(11667036-11667181)
chr6 (5-146)||(11735544-11735685)
chr6 (2-156)||(11759815-11759969)
chr6 (231-428)||(11706029-11706228)
chr6 (14-159)||(12089451-12089596)
[»] scaffold0196 (1 HSPs)
scaffold0196 (2-159)||(16526-16683)
[»] scaffold0019 (1 HSPs)
scaffold0019 (2-159)||(4809-4966)
[»] chr8 (2 HSPs)
chr8 (247-428)||(16389292-16389473)
chr8 (14-145)||(16389624-16389755)
[»] chr1 (1 HSPs)
chr1 (14-159)||(44815545-44815690)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 2 - 428
Target Start/End: Complemental strand, 11670304 - 11669879
Alignment:
Q  2 ttggtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactg 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11670304 ttggtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcacag 11670205  T
Q  102 tagcacacaggataccaactgtaatggattgcactatggttcttgctataagtgatggcgagttctttttcttcagnnnnnnngtctatttatctcatat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||       |||||||||||||||||    
T  11670204 tagcacacaggataccaactgtaatggattgcactatggttcttgctataagtgatggtgagttctttt-cttcagtttttttgtctatttatctcatat 11670106  T
Q  202 aacaaacactttcagactaatccatcaacaaatatttttctgttgatatgtgtggaaaaggtaagagtgcaaagtgcataaaatgtcttgtatatcacat 301  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  11670105 aacaaacactttcagactaatccataaacaaatatttttctgttgatatgtgtggaaaatgtaagagtgtaaagtgcataaaatatcttgtatatcacat 11670006  T
Q  302 aaatgataacatgtaaaatgtatggtacttgactttcacatttgaaatcatgaaaaataaaaggttaggtatatgttttcacttagttgatttcttcaaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||    
T  11670005 aaatgataacatgtaaaatgtatggtacttgactttcacatttgaaatcatgaaaaagaaaaggttaggaatatgttttcacttacttgatttcttcaaa 11669906  T
Q  402 ggaatgaaagtctctgactgtactttc 428  Q
    |||||||||||||||||||||||||||    
T  11669905 ggaatgaaagtctctgactgtactttc 11669879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 11628390 - 11628227
Alignment:
Q  2 ttggtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactg 101  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |    
T  11628390 ttggtgttggatgaagcaactgcttcgattgataattctactgatcttattctccagaaaaccattagggctgagtttgcagattgtacagtgatcacag 11628291  T
Q  102 tagcacacaggataccaactgtaatggattgcactatggttcttgctataagtgatggcgagtt 165  Q
    | ||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||| |||||    
T  11628290 tggcacataggataccaactgtgatggattgcagtatggttcttgccataagtgatggtgagtt 11628227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 11622124 - 11622282
Alignment:
Q  1 tttggtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcact 100  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||||    
T  11622124 tttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcagaaaaccattagggctgagttcgcagattgtacagtaatcact 11622223  T
Q  101 gtagcacacaggataccaactgtaatggattgcactatggttcttgctataagtgatgg 159  Q
    || |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  11622224 gtcgcacacagaataccaactgtgatggattgcaatatggttcttgctataagtgatgg 11622282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 11706491 - 11706346
Alignment:
Q  14 gaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactgtagcacacagga 113  Q
    ||||||||||| || |||||||| || |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||| ||||| |||||||    
T  11706491 gaagcaactgcatcgattgataactcaactgatctgattctgcagaaaaccattagaactgagtttgcagattctacggtgatcacagtagctcacagga 11706392  T
Q  114 taccaactgtaatggattgcactatggttcttgctataagtgatgg 159  Q
    |||| ||||| ||||||||||||||||||||| | || ||||||||    
T  11706391 taccgactgtgatggattgcactatggttctttcaatcagtgatgg 11706346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 11667036 - 11667181
Alignment:
Q  14 gaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactgtagcacacagga 113  Q
    ||||||||||| || |||||||| || |||||||| |||||||||||||| |||||  |||||||||||||||||||||||||||| ||||| |||||||    
T  11667036 gaagcaactgcatcgattgataactcaactgatctgattctgcagaaaactattagaactgagtttgcagattgtacggtgatcacagtagctcacagga 11667135  T
Q  114 taccaactgtaatggattgcactatggttcttgctataagtgatgg 159  Q
    ||| |||||| ||||| |||| |||||||||| | || ||||||||    
T  11667136 tacaaactgtgatggactgcaatatggttctttcaatcagtgatgg 11667181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 11735685 - 11735544
Alignment:
Q  5 gtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactgtag 104  Q
    |||||||| ||||||||||| |||||||||||||| || ||| | ||||| || |||||||||||    ||||||||||||||||| |||||||| ||||    
T  11735685 gtgttggatgaagcaactgcatcaattgataattcaacggatatgattctacaaaaaaccattagaaaggagtttgcagattgtactgtgatcacggtag 11735586  T
Q  105 cacacaggataccaactgtaatggattgcactatggttcttg 146  Q
    ||||||||||||||||||| |||||||||| |||||||||||    
T  11735585 cacacaggataccaactgtgatggattgcaatatggttcttg 11735544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 11759815 - 11759969
Alignment:
Q  2 ttggtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactg 101  Q
    ||||||||||| ||||||||||| ||||| |||||| | |||||| | ||||| || || ||||||||    ||||||||||||||||| |||||||| |    
T  11759815 ttggtgttggatgaagcaactgcatcaatcgataatgcgactgatttaattcttcaaaataccattagaaaagagtttgcagattgtacagtgatcacag 11759914  T
Q  102 tagcacacaggataccaactgtaatggattgcactatggttcttgctataagtga 156  Q
    |||||||||||||||||||||| |||||||||| |||||||||| | ||||||||    
T  11759915 tagcacacaggataccaactgtgatggattgcaatatggttctttccataagtga 11759969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 428
Target Start/End: Complemental strand, 11706228 - 11706029
Alignment:
Q  231 aaatatttttctgttgatatgtgtggaaaaggta--agagtgcaaagtgcataaaatgtcttgtatatcacataaatgataacatgtaaaatgtatggta 328  Q
    ||||| |||||||||||||| || ||| ||||||  |||||| |||||| | | ||| ||||||||  |||||||||||||||||||||||||  |||||    
T  11706228 aaataattttctgttgatatttgaggacaaggtataagagtgtaaagtgaaaacaatatcttgtatggcacataaatgataacatgtaaaatgagtggta 11706129  T
Q  329 cttgactttcacatttgaaatcatgaaaaataaaaggttaggtatatgttt--tcacttagttgatttcttcaaaggaatgaaagtctctgactgtactt 426  Q
    ||||| ||||| | ||||||||||  |||| |||| |||| | ||||||||  ||||||  ||||||||||||||| ||||| |||||||||||||||||    
T  11706128 cttgattttcaaacttgaaatcatataaaagaaaa-gtta-gaatatgtttaatcacttgcttgatttcttcaaagaaatgatagtctctgactgtactt 11706031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 12089596 - 12089451
Alignment:
Q  14 gaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactgtagcacacagga 113  Q
    ||||||||||| |||||||||||| | || ||| | ||||| || || ||||||||    ||||||||||||||||| ||||| || ||||| |||||||    
T  12089596 gaagcaactgcatcaattgataatgcgaccgatttaattcttcaaaataccattagaaaagagtttgcagattgtacagtgataacagtagcgcacagga 12089497  T
Q  114 taccaactgtaatggattgcactatggttcttgctataagtgatgg 159  Q
    |||||||||| |||||||||| |||||||||| | |||||||||||    
T  12089496 taccaactgtgatggattgcaatatggttctttccataagtgatgg 12089451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 2 - 159
Target Start/End: Original strand, 16526 - 16683
Alignment:
Q  2 ttggtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||| |||||||| |    
T  16526 ttggtgttggacgaagcaactgcttcaattgataattctactgatcttattctacaaaaaaacattagggttgagtttgcagattgtacagtgatcacag 16625  T
Q  102 tagcacacaggataccaactgtaatggattgcactatggttcttgctataagtgatgg 159  Q
    ||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||    
T  16626 tagcacacaggataccaacggtgatggattgcaatatggttcttgctataagtgatgg 16683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 4966 - 4809
Alignment:
Q  2 ttggtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactg 101  Q
    ||||||||||| ||||||||||| ||| ||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||||||||| |||||||| |    
T  4966 ttggtgttggatgaagcaactgcatcagttgataattctacagatctgattctgcaaaaaatcattagggctgagtttgcagattgtacagtgatcacag 4867  T
Q  102 tagcacacaggataccaactgtaatggattgcactatggttcttgctataagtgatgg 159  Q
    |||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  4866 tagcacacaggataccaactgtgatggattgcaatatggttctttctataagtgatgg 4809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 428
Target Start/End: Complemental strand, 16389473 - 16389292
Alignment:
Q  247 atatgtgtggaaaaggtaagagtgcaaagtgcataaaatgtcttgtatatcacataaatgataacatgtaaaatgtatggtacttgactttcacatttga 346  Q
    ||||||||||| ||||||||||||| ||||| | | ||| ||||||||| |||||||||||||||||||||||||  |||||||||| ||||| | || |    
T  16389473 atatgtgtggacaaggtaagagtgcgaagtgaaaacaatatcttgtatagcacataaatgataacatgtaaaatgagtggtacttgattttcaaacttta 16389374  T
Q  347 aatcatgaaaaataaaaggttaggtatatgttt--tcacttagttgatttcttcaaaggaatgaaagtctctgactgtactttc 428  Q
    ||||||  |||| |||| |||| | ||||||||  ||||||  ||||||||||||||  ||||||| ||| |||||||||||||    
T  16389373 aatcatataaaagaaaa-gtta-gaatatgtttaatcacttgcttgatttcttcaaataaatgaaattctgtgactgtactttc 16389292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 16389755 - 16389624
Alignment:
Q  14 gaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactgtagcacacagga 113  Q
    ||||||||||| ||| | |||||||| ||||||  |||||||| ||||||||||||  | ||||||||||||||||| || ||||| ||||| ||||| |    
T  16389755 gaagcaactgcatcagtcgataattcaactgattatattctgctgaaaaccattagaaccgagtttgcagattgtacagtaatcacagtagcgcacagaa 16389656  T
Q  114 taccaactgtaatggattgcactatggttctt 145  Q
    | |||||||| |||||||||||||||||||||    
T  16389655 ttccaactgtgatggattgcactatggttctt 16389624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 44815545 - 44815690
Alignment:
Q  14 gaagcaactgcttcaattgataattctactgatcttattctgcagaaaaccattagggctgagtttgcagattgtacggtgatcactgtagcacacagga 113  Q
    ||||||||||| |||||||||||| | |||||  | ||| | ||||||||||||||| |||| ||||| ||||||||||| ||||| ||||| || ||||    
T  44815545 gaagcaactgcatcaattgataatgcaactgacttgattttacagaaaaccattaggactgaatttgccgattgtacggtaatcacagtagctcatagga 44815644  T
Q  114 taccaactgtaatggattgcactatggttcttgctataagtgatgg 159  Q
    |||||||||| ||||||||||| | ||||||| | || ||||||||    
T  44815645 taccaactgtgatggattgcaccaaggttctttcaatcagtgatgg 44815690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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