View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9577_low_5 (Length: 355)
Name: NF9577_low_5
Description: NF9577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9577_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 12559311 - 12559648
Alignment:
| Q |
1 |
ttccactattttcttcaacgctatgcttgatttctagctagttaatttctataattatggtgtgaaagctccttcacttctcgtcttgtttcatcacacc |
100 |
Q |
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| T |
12559311 |
ttccactattttcttcaacgctatgcttgatttctagctagttaatttctataattatggtgtgaaagctccttcacttctcgtcttgtttcatcacacc |
12559410 |
T |
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| Q |
101 |
aatcaattttttggaaaaagccaaagtttgcggttttt-catatgaagagcaccatatgatagtgattatattagccaggactttaatacaaggcatata |
199 |
Q |
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| T |
12559411 |
aatcaattttttggaaaaagccaaagtttgcggttttttcttatgaagagcaccatatgatagtgattatgttagccaggactttaatacaaggcatata |
12559510 |
T |
|
| Q |
200 |
cttctgtgtgtggtggggcataaacaaattaattatggaaatgaaataccatataactataggtggcccatatataattgcttggctgcatcacgtttat |
299 |
Q |
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| T |
12559511 |
cttctgtgtgtggtggggcataaacaaattaattatggaaatgaaataccatataactataggtggcccatatataattgcttggctgcatcacgtttat |
12559610 |
T |
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| Q |
300 |
gaaaatagaaaagaataatgaatttgatactacaacgc |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
12559611 |
gaaaatagaaaagaataatgaatttgatactacaacgc |
12559648 |
T |
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