View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9577_low_6 (Length: 336)
Name: NF9577_low_6
Description: NF9577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9577_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 34257009 - 34256822
Alignment:
| Q |
17 |
tttcattctcctaatgttaattttggtagactattatcaattgtcattgaccaccatcaaccactattttgaacactattagtcactatttcgaccacca |
116 |
Q |
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| T |
34257009 |
tttcattctcctaatgtcaattttagtagactactatcaattgtaattgaccaccatcaaccaccattttgaacactattagtcactattccgaccccca |
34256910 |
T |
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| Q |
117 |
ttagttactatttcgaccatcgtgggacaccaacactttgacccatcattggctgttgtgtctgattgtttgttgaccaccactctaa |
204 |
Q |
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| T |
34256909 |
ttagttactatttcgaccattgtgggacaccaacactttgacccatcattggctgttgtgtccggttgtttgttgaccaccactctaa |
34256822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 34256824 - 34256747
Alignment:
| Q |
250 |
taatgtggttacttgttcgtcgactgttactctaactattgtcgacggccactccaattttgattggccaccaccacc |
327 |
Q |
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| T |
34256824 |
taatgcggttacttgttcgtcgactgttactctaactattgtcgaccgccactccaattttggttggccatcaccacc |
34256747 |
T |
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