View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9577_low_8 (Length: 262)
Name: NF9577_low_8
Description: NF9577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9577_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 38995535 - 38995306
Alignment:
| Q |
17 |
aatgataatcaagatggctgtttttgtaagcaatttaaactgttagtaattttttgtttgttatttggtgtggttttagggaggatatgtagacaccgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38995535 |
aatgataatcaagatggctgtttttgtaagcaatttaaactgttagtaattttttgtttgttatttggtgtggttttagggaggatatgtagacaccgaa |
38995436 |
T |
|
| Q |
117 |
acattgagttgataattcaccgtccataatcttatacattgataaagttgggagagcaatgaaatgttatctgttgaaggtaaggataagcaagtgcatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38995435 |
acattgagttgataattcaccgtccataatctcatacattgataaagttgggagagcaatgaaatgttatctgttgaaggtaaggataagcaagtgcatc |
38995336 |
T |
|
| Q |
217 |
aaatttaagtattaaataatatagtagtat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38995335 |
aaatttaagtattaaataatatagtagtat |
38995306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 39483464 - 39483369
Alignment:
| Q |
29 |
gatggctgtttttgtaagcaatttaaactgttagtaattttttgtttgttatttggtgtggttttagggaggatatgtagacaccgaaacattgag |
124 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
39483464 |
gatggctgtttttgtaagcaatttaaagtattagtaactttttgtttgttatttggtgtagtttcagggaggatgtgtagacactgaaacattgag |
39483369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University