View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9578_high_15 (Length: 236)
Name: NF9578_high_15
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7432735 - 7432957
Alignment:
| Q |
1 |
aatgtaaaatgtagatttatgtcgacaagaaatgaaatttgacatggtttgtgatgagatggtcccaatattgaatattgatacagttatagtgctaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7432735 |
aatgtaaaatgtagatttatgtcgacaagaaatgaaatttgacatggtttgtgatgagatggtcccaatattgaatattgatacagttatagtgctaaga |
7432834 |
T |
|
| Q |
101 |
gaattgggttgaaatggatgagcatgtgagtgaaatgatggtagataagaatttagatttaatagagttatagaccaacgagattattagattagattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7432835 |
gaattgggttgaaatggatgagcatgtgagtgaaatgatggtagataagaatttagatttaatagagttatagaccaacgagattattagattagattat |
7432934 |
T |
|
| Q |
201 |
aggtttctttttaagtggatagt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7432935 |
aggtttctttttaagtggatagt |
7432957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University