View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_high_16 (Length: 235)
Name: NF9578_high_16
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 971406 - 971201
Alignment:
| Q |
17 |
catatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctattaaaattgttaaaactataatgttgtgtgtcagaagtgt |
116 |
Q |
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| T |
971406 |
catatcatagagtggaatgggatttcctagaaagcactcttctcactatgggcttccctattaaaattgttaaaactataatgctgtgtgtcagaagtgt |
971307 |
T |
|
| Q |
117 |
atctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattagacaaggagatcctctgcccccttatcttttcataatc |
216 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
971306 |
gtctttttccattcttataaatggatccccatctactatgtttaaacctaaaaggggaattagacaaggagatcctctctccccttatcttttcataatt |
971207 |
T |
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| Q |
217 |
tgtgct |
222 |
Q |
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|||||| |
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| T |
971206 |
tgtgct |
971201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 43136424 - 43136247
Alignment:
| Q |
17 |
catatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctattaaaattgttaaaactataatgttgtgtgtcagaagtgt |
116 |
Q |
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||||||| |||||||| |||||||| ||||| ||||| |||| |||| ||||||||||| |||| || ||||| || | |||||||||||||| |
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| T |
43136424 |
catatgacagagtggagtgggattttttagaatcaactctcttcaccatgggttttcctattaatcttgtcaatactatcgtgctttgtgtcagaagtgt |
43136325 |
T |
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| Q |
117 |
atctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattagacaaggagatcctct |
194 |
Q |
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|||||||| ||||| || |||| ||| | ||||||| ||||||||||| || | ||||||||||||||| ||||| |
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| T |
43136324 |
ctctttttctattctaattaatggatctcattctactacttttaaacctaagagaggaattagacaaggagaccctct |
43136247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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