View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9578_high_17 (Length: 228)
Name: NF9578_high_17
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_high_17 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 40402938 - 40402712
Alignment:
| Q |
7 |
gggtgaacaagccgtggccatgattaacttttggaaaatcatcgatatacgtacccaaataactttgnnnnnnngttcacgttacgtatatacccaaata |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40402938 |
gggtgaacaagccgtggccatgattaacttttggaaaatcatcgatatacgtacccaaataactttgtttttttgttcacgttacgtatatacccaaata |
40402839 |
T |
|
| Q |
107 |
atttatt-----gatgatgtgatatgagaaagagataaaaagaaaattatggattaaatgagtgttagaaatttaagggtgttcaaatataagaactctt |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40402838 |
atttattttattgatgatgtgatatgagaaagagataaaaagaaaattatgtattaaatgagtgttagaaatttaagggtgttcaaatataagaactctt |
40402739 |
T |
|
| Q |
202 |
aatttatatcccaaccaaacttagatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40402738 |
aatttatatcccaaccaaacttagatt |
40402712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University