View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_high_3 (Length: 493)
Name: NF9578_high_3
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 12814994 - 12815468
Alignment:
| Q |
1 |
attttcaccccaaaaaaccaagtacacagccaaatgtctaaagtcaaagactattcactgtgaaactccggctgccacagggtagcttccgacagaagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12814994 |
attttcaccccaaaaaaccaagtacacagccaaatgcctaaagtcaaagactattcactgtgaaactccggctgccacagggtagcttccgacagaagca |
12815093 |
T |
|
| Q |
101 |
tggcctgatttcttgcgagcactgctgctgtctttgtcagaatgcgatgaaccagtcttttttctcttgttttctggagaatcaccaagtaagtccaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815094 |
tggcctgatttcttgcgagcactgctgctgtctttgtcagaatgcgatgaaccagtcttttttctcttgttttctggagaatcaccaagtaagtccaaaa |
12815193 |
T |
|
| Q |
201 |
atgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggattatccgaagacttgcctgatgatgatcttttaccact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815194 |
atgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggattatccgaagacttgcctgatgatgatcttttaccact |
12815293 |
T |
|
| Q |
301 |
acttccttgcttctctttcttcaaatgatcgcgtgagatctggaaactcttacctgacaaatccatctcaacggttattgaacaaattaaatcagagtta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815294 |
acttccttgcttctctttcttcaaatgatcgcgtgagatctggaaactcttacctgacaaatccatctcaacggttattgaacaaattaaatcagagtta |
12815393 |
T |
|
| Q |
401 |
aatgagaaaagactatccgaaaaagtatattcaatcacctggagtctgagaannnnnnnagttgggaggagttaa |
475 |
Q |
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| T |
12815394 |
catgagaaaagactatccgaaaaagtatattcaatcacctggagtctgagaagggggagagttgggaggagttaa |
12815468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 12752032 - 12752508
Alignment:
| Q |
1 |
attttcaccccaaaaaaccaagtacacagccaaatgtctaaagtcaaagactat--tcactgtgaaactccggctgccacagggtagcttccgacagaag |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12752032 |
attttcaccccaaaaaaccaagtacacagccaaatgcctaaagtcaaagactatattcactgtgaaactccggctgccacagggtagcttccgacagaag |
12752131 |
T |
|
| Q |
99 |
catggcctgatttcttgcgagcactgctgctgtctttgtcagaatgcgatgaaccagtcttttttctcttgttttctggagaatcaccaagtaagtccaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12752132 |
catggcctgatttcttgcgagcactgctgctgtctttgtcagaatgcgatgaaccagtcttttttctcttgttttctggagaatcgccaagtaagtccaa |
12752231 |
T |
|
| Q |
199 |
aaatgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggattatccgaagacttgcctgatgatgatcttttacca |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12752232 |
aaatgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggattatccgaagacttgcctgatgatgatcttttacca |
12752331 |
T |
|
| Q |
299 |
ctacttccttgcttctctttcttcaaatgatcgcgtgagatctggaaactcttacctgacaaatccatctcaacggttattgaacaaattaaatcagagt |
398 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12752332 |
ctaattccttgcttctctttcttcaaatgatcgcgtgagatctggaaactcttacctgacaaatccatctcaacggttattgaacaaattaaatcagagt |
12752431 |
T |
|
| Q |
399 |
taaatgagaaaagactatccgaaaaagtatattcaatcacctggagtctgagaannnnnnnagttgggaggagttaa |
475 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12752432 |
tacatgagaaaagactatccgaaaaagtatattcaatcacctggagtctgagaagggggagagttgggaggagttaa |
12752508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 196 - 346
Target Start/End: Complemental strand, 7768370 - 7768223
Alignment:
| Q |
196 |
caaaaatgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggattatccgaagacttgcctgatgatgatctttta |
295 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| | ||||| | ||||||||||||||| |||||| || |||||| |||||||||||||| |
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| T |
7768370 |
caaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgacttgt---atgatgatctttta |
7768274 |
T |
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| Q |
296 |
ccactacttccttgcttctctttcttcaaatgatcgcgtgagatctggaaa |
346 |
Q |
| |
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| T |
7768273 |
ctgctactcctttgcttctctgtcttcaaatgatcgcgtgaaatctggaaa |
7768223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 352
Target Start/End: Complemental strand, 7774658 - 7774415
Alignment:
| Q |
106 |
tgatttcttgcgagcactgctgctgtctttgtcagaatgcgatgaaccagtcttttttctcttgttttctggagaatcaccaagtaagtccaaaaatgca |
205 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||| ||||| ||| | ||||| |||||||||||||| || |||| | ||||||||||||| | |
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| T |
7774658 |
tgatttcttgggagcactgtcgctgcctttgtcagactgcgacgaatccatcttt---ctcttgttttctggggatgcaccgattaagtccaaaaatcga |
7774562 |
T |
|
| Q |
206 |
cctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggattatccgaagacttgcctgatgatgatcttttaccactacttc |
305 |
Q |
| |
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||||| ||||||||| ||||||| ||| |||||| || ||||||||||||||||||| || ||||| | || |||||||||| ||||| | |
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| T |
7774561 |
cctcttcttgaaccattcatattcttaagatatgcaatgtcagctttattttgaggattgtcatttgacttataataggaagatcttttactgctactcc |
7774462 |
T |
|
| Q |
306 |
cttgcttctctttcttcaaatgatcgcgtgagatctggaaactctta |
352 |
Q |
| |
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|||||||||| ||||| |||||||||||| |||||||| |||||| |
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| T |
7774461 |
gttgcttctctgtcttcgtatgatcgcgtgaaatctggaacctctta |
7774415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 7779469 - 7779318
Alignment:
| Q |
106 |
tgatttcttgcgagcactgctgctgtctttgtcagaatgcgatgaaccagtcttttttctcttgtttt-ctggagaatcaccaagtaagtccaaaaatgc |
204 |
Q |
| |
|
|||||||||| |||||||| ||| | |||||||||| ||||||||| | ||||||||||||| |||| |||| |||||||||| || || ||||||||| |
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| T |
7779469 |
tgatttcttgggagcactgttgcggcctttgtcagactgcgatgaatcgatcttttttctcttatttttctgg-gaatcaccaattatgttcaaaaatgc |
7779371 |
T |
|
| Q |
205 |
acctctccttgaaccaggcatattcctaacatatgccctggcagctttatttt |
257 |
Q |
| |
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| |||||||||||| | |||||||| ||| | | || ||||||||||||||| |
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|
| T |
7779370 |
atctctccttgaactatgcatattcttaatacacgcaatggcagctttatttt |
7779318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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