View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9578_high_5 (Length: 408)
Name: NF9578_high_5
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 2361334 - 2360956
Alignment:
| Q |
1 |
gaaaatgggcggcggagataagagacccggcgcgtggagtgcgtgtgtggcttggtacatttcaaacggctgaagaagctgctattgtgtacgacaacgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361334 |
gaaaatgggcggcggagataagagacccggcgcgtggagtgcgtgtgtggcttggtacatttcaaacggctgaagaagctgctattgtgtacgacaacgc |
2361235 |
T |
|
| Q |
101 |
ggctattaagttgcgtggaccagacgcgctaactaatttcataactccacctgtaagtgcagctgccacgtgtcagttatcatcaccaccaccggaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361234 |
ggctattaagttgcgtggaccagacgcgctaactaatttcataactccacctgtaagtgcagctgccacgtgtcagttatcatcaccaccaccggaaaat |
2361135 |
T |
|
| Q |
201 |
gaaattcctcttccgtcattaccgttaccggcaaactccggtgaagaatctcaatctcaatcacaatctcaaaacaataataataagagtttattttctc |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2361134 |
gaaattcctctttcgtcattaccgttaccggcaaactccggtgaagaatctcaatc------------tcaaaacaataataataagagtttattttctc |
2361047 |
T |
|
| Q |
301 |
ctacttcagttcttcaatgttgttcatcttctgaagaagtagctgaatctgaatcaatgttttcaattccaagtgatatacagtttgattt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361046 |
ctacttcagttcttcaatgttgttcatcttctgaagaagtagctgaatctgaatcaatgttttcaattccaagtgatatacagtttgattt |
2360956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 41197538 - 41197611
Alignment:
| Q |
54 |
ggtacatttcaaacggctgaagaagctgctattgtgtacgacaacgcggctattaagttgcgtggaccagacgc |
127 |
Q |
| |
|
||||| ||| |||| || |||||||||||||| || || ||||| || ||||||||| | |||||||||||||| |
|
|
| T |
41197538 |
ggtacttttgaaactgcagaagaagctgctatggtttatgacaatgccgctattaagcttcgtggaccagacgc |
41197611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University