View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_11 (Length: 430)
Name: NF9578_low_11
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 5 - 413
Target Start/End: Original strand, 37850251 - 37850659
Alignment:
| Q |
5 |
gagaagcagagaccttgagaccatagcggcaaaagcaccagaccagaggtgtttggtcatgttgacagcacccgatccatgaacctgaatattctccttc |
104 |
Q |
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| T |
37850251 |
gagaagtaaagaccttgagaccatagcggcaaaagcaccagaccagaggtgtttggtcatgttgacagcacccgatccatgaacatgaatattctccttc |
37850350 |
T |
|
| Q |
105 |
tcttctttttgattggatttgtatctatgatctacatcatcgcttcttccgtttatagacaaactcaaggacgagaaaacagcaccaccttgcaacctca |
204 |
Q |
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| T |
37850351 |
tcttctttttgattggatttgtatctatgatctacatcatcgcttcttccgtttatagacaaactcaaggaagagaaaacagcaccaccttgcaccctca |
37850450 |
T |
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| Q |
205 |
gaatctgaaaaccgacccttttcctgatattccaagaaaaacaggaaacagtggtagaattcgatgaagaagatgggatgcaggtaatgaaggaggtagg |
304 |
Q |
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| T |
37850451 |
gaatctgaaaaccgacccttttcctgatattacaagaaaaacaggaaacagtggtagaattcgatgaagaagatgggatgcaggtaatgaaggaggtagg |
37850550 |
T |
|
| Q |
305 |
aaccgtgtcagcgtgaagaaaaagaccacctgggaagaagaaggaatcgtcgttatgttggatcaagtgggacattgttataggtgggtttggtacgaaa |
404 |
Q |
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| T |
37850551 |
aaccgtgtcagcgtgaagaaaaagaccacctgggaagaagaaggaatcgtcgttatgttggatcaagtgggacattgttataggtgggtttggtacgaaa |
37850650 |
T |
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| Q |
405 |
agttgatct |
413 |
Q |
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| T |
37850651 |
agttgatct |
37850659 |
T |
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