View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_14 (Length: 402)
Name: NF9578_low_14
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 22 - 376
Target Start/End: Complemental strand, 11758218 - 11757864
Alignment:
| Q |
22 |
gtttcgtgttatctccgacgagatattcaaattcaaattcaaattcgaatttccgttactcgattttgaattctcagcaaaagtaagttccgatttcgta |
121 |
Q |
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| T |
11758218 |
gtttcgtgttatctccgacgagatattcaaattcaaattcaaattcgaatttccgttactcgattttgaattctcagcaaaagtaagttccgatttcgta |
11758119 |
T |
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| Q |
122 |
caaacttctgaaacttcatcgttctcctttccattttcaaacttcaaaatcaagtttctacgaactccagaactagaatccacacacgaagtctccgaaa |
221 |
Q |
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| T |
11758118 |
caaacttcagaaacttcatcgttctcttttccattttcaaacttcaaaatcaagtttctacgaactccagaactagaatccacacacgaagtctccgaaa |
11758019 |
T |
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| Q |
222 |
cttcaacttcattctcactcctcttctcaaatctacgaacacattcaacaccactcgaaatttcacttctcgagttcgttcttcctttaacagcagagat |
321 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11758018 |
cttcaacttcattctcattcctcttctcaaatctacgaacacattcaacaccactcgaaatttcacttctcgagttcgttcttcctttaacagcagagat |
11757919 |
T |
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| Q |
322 |
tctactcgaatcacacgaaacttcacctccggcgaaatccgaaccagaactcgaa |
376 |
Q |
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| T |
11757918 |
tctactcgaatcacacgaaacttcacctccggcgaaatccgaaccagaactcgaa |
11757864 |
T |
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