View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_16 (Length: 379)
Name: NF9578_low_16
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 41113685 - 41114042
Alignment:
| Q |
12 |
cagaacaggttgaaaggcacaacttggtagtttttctttttagccattggcactttaaacagctaagctcttcgaagcaatttcaaacacatcctctgat |
111 |
Q |
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| T |
41113685 |
cagaacaggttgaaaggcacaacttggtagtttttctttttagccattggcactttaagcagctaagctctttgaagcaatttcaaacacatcctctgat |
41113784 |
T |
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| Q |
112 |
agataggccatcagtagacacaatcttctccagctgggcctgcagcaatacaacacaataaaaataatgacagccagaagcaaaattatgttattcaaaa |
211 |
Q |
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| T |
41113785 |
agataggccattagtagacacaatcttctccagctgggcctgcagcaatacaacacaataaaaataatgacagccagaagcaaaattatgttattcaaaa |
41113884 |
T |
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| Q |
212 |
atagtttaagaaaattacagctaatgtggcaaaataataactttattacctttgcaag-tttttgtctgatatcatcataacgtctccaacttgagaagt |
310 |
Q |
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| T |
41113885 |
atagtttaagaaaattacagctaatgtggcaaaataataactttattacctttgcaagttttttgtctgttatcatcataacgtctccatcttgagaagt |
41113984 |
T |
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| Q |
311 |
ttgacaccatgtgtgaggcagtctgcattagaaaaaatccaatccaacataaggacca |
368 |
Q |
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| T |
41113985 |
ttgacaccatgtgtgaggcagtctgcattagaaaaaatccaatccaacataaggacca |
41114042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 41099866 - 41100215
Alignment:
| Q |
12 |
cagaacaggttgaaaggcacaacttggtagtttttctttttagccattggcactttaaacagctaagctcttcgaagcaatttcaaacacatcctctgat |
111 |
Q |
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|||||||| |||||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41099866 |
cagaacagtttgaaaggcacagcttggtagttttgattaccagccattggcactttaagcagctaagctcttcgaagcaatttcaaacacattctctgat |
41099965 |
T |
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| Q |
112 |
agataggccatcagtagacacaatcttctccagctgggcctgcagcaatacaacacaat-------aaaaataatgacagccagaagcaaaattatgtta |
204 |
Q |
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| T |
41099966 |
ag----gccattagtagacatgatcttctccagctgggcctgcaacaatacaacacaattattttaaaaaatcatgacagcaagtattaaaattatgtta |
41100061 |
T |
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| Q |
205 |
ttcaaaaatagtttaagaaaattacagctaatgtggcaaaataataactttattacctttgcaagtttttgtctgatatcatcataacgtctccaacttg |
304 |
Q |
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||||| |||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |
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| T |
41100062 |
ttcaataatactttaagaaaattgcagctaatgtagcaaaataataactttattacctttgcaagtttttgtctgatctcatcataacgcctccatcttg |
41100161 |
T |
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| Q |
305 |
agaagtttgacaccatgtgtgaggcagtctgcattag-aaaaaatccaatccaa |
357 |
Q |
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| T |
41100162 |
agaaggctgacaccattcttgaggcaacctacataagaaaaaaatccaatccaa |
41100215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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