View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_19 (Length: 364)
Name: NF9578_low_19
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 40753686 - 40753348
Alignment:
| Q |
19 |
agtcctaagt-atgtaaatatgttatagttccaaaagcatgtaaaatctgtctatttagtctcttttattaaattagcatcgattaaattgatagattt- |
116 |
Q |
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| T |
40753686 |
agtcctaagttatgtaaatatgttatagttccaaaagcatgtaaaatctatctatttagtctcttttattaaactagcatcgattaaattgatagatttt |
40753587 |
T |
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| Q |
117 |
catatattttagagactaagttggttgatagattacaaaaacaannnnnnngaa-atgttaatgcaagtattattgatgaattgcaccttgttttcaaag |
215 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40753586 |
catatattttagagactaagttg----atagattacaaaaacaatttttttgaatatgtta-tgcaagtattattgatgaattgcaccttgttttcaaag |
40753492 |
T |
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| Q |
216 |
gcgtgagtccactgcttcaattttttggcataatggtaagctaattggttaataatctaaacaacgtaatagccattactaaataatagaaaccaatgac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40753491 |
gcgtgagtccactgcttcaattttttggcataatggtaagctaattggttaataatctaaacaatgtaatagccattactaaataatagaaaccaatgac |
40753392 |
T |
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| Q |
316 |
atgaaaagtattgcaaattatacttatgagtcgtctatgcttct |
359 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
40753391 |
atgaaaagtaatgcaaattatacttatgagtcgtttatgcttct |
40753348 |
T |
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