View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9578_low_20 (Length: 349)

Name: NF9578_low_20
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9578_low_20
NF9578_low_20
[»] chr1 (1 HSPs)
chr1 (1-294)||(42661510-42661805)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 42661510 - 42661805
Alignment:
Q  1 tgcaacagatgtgcgtagcttgagttgttcgaagaacaaaacttggacaacaacacgaagtggtagcctttcgttttgagctgcgtgtgtgcttgcttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42661510 tgcaacagatgtgcgtagcttgagttgttcgaagaacaaaacttggacaacaacacgaagtggtagcctttcgttttgagctgcgtgtgtgcttgcttcc 42661609  T
Q  101 aatgagagtttctggcaattcatcagcctgcagatttgttccttctcagattctgtcatccatgcatggctctgaaattcataattttccgttagtgtct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42661610 aatgagagtttctggcaattcatcagcctgcagatttgttccttctcagattctgtcatccatgcatggctctgaaattcataattttccgttagtgtct 42661709  T
Q  201 gtctaaaaattaccaatgaaa---catgtgtactaaatgaaaaaacaaatctctttaaatcttatgagacaaatattattaatttgatcctcttatt 294  Q
    |||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42661710 gtctaaaaattaccaatgaaacatcatgtgtactaaatg-aaaaacaaatctctttaaatcttatgagacaaatattattaatttgatcctcttatt 42661805  T

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